Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHP34_RS37085 Genome accession   NZ_CP107861
Coordinates   8185979..8186629 (-) Length   216 a.a.
NCBI ID   WP_266722225.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00499     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8180979..8191629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP34_RS37065 (OHP34_37070) - 8181734..8182564 (-) 831 WP_327664479.1 alpha/beta fold hydrolase -
  OHP34_RS37070 (OHP34_37075) sigJ 8182723..8183604 (+) 882 WP_327664480.1 RNA polymerase sigma factor SigJ -
  OHP34_RS37075 (OHP34_37080) - 8183809..8184570 (+) 762 WP_327664481.1 GntR family transcriptional regulator -
  OHP34_RS37080 (OHP34_37085) - 8184668..8185825 (-) 1158 WP_327664482.1 ROK family protein -
  OHP34_RS37085 (OHP34_37090) vraR 8185979..8186629 (-) 651 WP_266722225.1 response regulator transcription factor Regulator
  OHP34_RS37090 (OHP34_37095) - 8186644..8187861 (-) 1218 WP_327664483.1 histidine kinase -
  OHP34_RS37095 (OHP34_37100) - 8187970..8188893 (+) 924 WP_327664484.1 ATP-binding cassette domain-containing protein -
  OHP34_RS37100 (OHP34_37105) - 8188906..8189649 (+) 744 WP_327666321.1 ABC transporter permease -
  OHP34_RS37105 (OHP34_37110) - 8189735..8190532 (+) 798 WP_327664485.1 SAM-dependent methyltransferase -
  OHP34_RS37110 (OHP34_37115) mug 8190542..8191081 (-) 540 WP_327666322.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22982.60 Da        Isoelectric Point: 4.9855

>NTDB_id=647215 OHP34_RS37085 WP_266722225.1 8185979..8186629(-) (vraR) [Streptomyces sp. NBC_00499]
MPLTVLLVDDEPLVRAGLRAVLEAQPDITVVGEAADGAAVVPLVRELRPDVVAMDVRMPLLDGIEATRAVLRGAERPPKI
LVITTFENDEYVYGALRAGADGFLLKRARPEEIVHAVRLVAAGESLLFPAAVRKLAAEYGSSVARAALERAALTEREEQV
LRLMARGLSNAEIAADLVVGTETVKSHVSAVLTKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=647215 OHP34_RS37085 WP_266722225.1 8185979..8186629(-) (vraR) [Streptomyces sp. NBC_00499]
GTGCCGCTCACCGTGCTTCTTGTCGACGACGAACCGCTCGTCCGCGCGGGCCTGCGCGCGGTGCTCGAAGCGCAGCCGGA
CATCACGGTGGTGGGTGAGGCCGCGGACGGCGCGGCGGTCGTGCCCCTGGTCCGCGAGCTGCGACCCGACGTGGTCGCCA
TGGACGTCCGGATGCCGCTGCTCGACGGGATCGAGGCCACGCGCGCGGTGCTGCGCGGCGCGGAGCGGCCGCCGAAGATC
CTCGTGATCACCACGTTCGAGAACGACGAGTACGTGTACGGGGCGCTGCGCGCGGGCGCCGACGGCTTCCTCCTGAAGCG
GGCACGCCCCGAGGAGATCGTGCACGCGGTGCGCCTCGTCGCGGCGGGCGAGTCGCTCCTGTTCCCGGCCGCGGTCCGCA
AGTTGGCGGCGGAGTACGGGAGTTCGGTGGCCCGTGCGGCCCTGGAGCGCGCGGCGCTGACCGAACGCGAGGAGCAGGTG
CTGCGGCTCATGGCGCGCGGCCTGTCGAACGCGGAGATCGCCGCGGACCTGGTCGTCGGCACCGAGACGGTCAAGTCCCA
CGTGAGCGCGGTGCTGACGAAGCTGGGCGCGCGGGACCGGACGCAGGCCGTGATCGCGGCGTACGAGTCGGGGTTCGTGG
CGCCGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.589

99.074

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.366