Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHP34_RS33890 Genome accession   NZ_CP107861
Coordinates   7479814..7480449 (+) Length   211 a.a.
NCBI ID   WP_327664003.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00499     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7474814..7485449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP34_RS33865 (OHP34_33860) - 7474835..7475719 (+) 885 WP_327663999.1 sterol desaturase family protein -
  OHP34_RS33870 (OHP34_33865) - 7475734..7476393 (+) 660 WP_327666293.1 lysoplasmalogenase -
  OHP34_RS33875 (OHP34_33870) - 7476431..7477474 (+) 1044 WP_327664000.1 zinc-dependent alcohol dehydrogenase family protein -
  OHP34_RS33880 (OHP34_33875) - 7477492..7478268 (-) 777 WP_327664001.1 class I SAM-dependent methyltransferase -
  OHP34_RS33885 (OHP34_33880) - 7478504..7479817 (+) 1314 WP_327664002.1 sensor histidine kinase -
  OHP34_RS33890 (OHP34_33885) vraR 7479814..7480449 (+) 636 WP_327664003.1 response regulator transcription factor Regulator
  OHP34_RS33895 (OHP34_33890) - 7480543..7481562 (-) 1020 WP_406514731.1 CopD family protein -
  OHP34_RS33900 (OHP34_33895) - 7481726..7483144 (-) 1419 WP_327664004.1 CoA transferase -
  OHP34_RS33905 (OHP34_33900) - 7483256..7484812 (-) 1557 WP_327664005.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22172.59 Da        Isoelectric Point: 9.8333

>NTDB_id=647209 OHP34_RS33890 WP_327664003.1 7479814..7480449(+) (vraR) [Streptomyces sp. NBC_00499]
MSAAVRVLLCDDHAVVRAGLRALLSSTDGMEVVGEADSGERALAMAEALRPDVVLMDLQLGTGMDGVEATRRLTASGAEE
APRVLVLTMFDTDADIARAVAAGATGYLLKAERPDRLFVAIRDAAAGRTALSGAVADRVVSRLRAPGPALTEREREVLAR
LAQGLGNREIARALFLSEATVKTHLGRVYAKLGVRTRAGAVAAAARHRLLP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=647209 OHP34_RS33890 WP_327664003.1 7479814..7480449(+) (vraR) [Streptomyces sp. NBC_00499]
GTGAGCGCCGCCGTACGGGTCCTGCTCTGCGACGACCACGCCGTCGTCCGCGCCGGGCTGCGCGCCCTGCTGTCCAGCAC
CGACGGCATGGAGGTGGTCGGCGAGGCGGACAGCGGTGAGCGGGCCCTGGCGATGGCCGAGGCGCTGCGCCCCGACGTGG
TCCTCATGGACCTGCAACTCGGCACCGGCATGGACGGCGTCGAGGCCACCCGCCGGCTGACGGCGTCCGGCGCGGAGGAG
GCCCCGCGCGTGCTGGTGCTCACCATGTTCGACACCGACGCGGACATCGCCCGCGCTGTCGCCGCGGGCGCCACCGGCTA
CCTGCTCAAGGCCGAGCGCCCCGACCGGCTGTTCGTGGCGATCCGCGACGCCGCCGCAGGACGCACCGCCCTGTCGGGTG
CGGTCGCCGACCGGGTGGTGTCCCGGCTCCGCGCCCCCGGGCCCGCGCTGACCGAACGCGAACGTGAGGTCCTGGCCCGC
CTGGCCCAGGGCCTGGGAAACCGGGAGATCGCCCGTGCCCTGTTCCTCAGCGAGGCCACGGTCAAGACCCACCTGGGCCG
CGTCTACGCCAAGCTCGGGGTGCGCACCAGGGCGGGAGCCGTGGCGGCCGCGGCCCGCCACCGACTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.571

99.526

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

34.234

100

0.36