Detailed information NTG0064719

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IAK_RS0125345
• Genome accession: NZ_AFXK01000001
• Coordinates: 5403200..5404072 (+)
• Length: 290 a.a.
• NCBI ID: WP_019726811.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa 213BR
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5398200..5409072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAK_RS0125320	nadC	5398571..5399419 (+)	849	WP_003116246.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IAK_RS0125330	-	5399572..5400045 (-)	474	WP_015503553.1	pilin	-
IAK_RS0125335	pilB	5400276..5401976 (+)	1701	WP_003120945.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IAK_RS0125340	pilC	5401980..5403197 (+)	1218	WP_010792214.1	type II secretion system F family protein	Machinery gene
IAK_RS0125345	pilD	5403200..5404072 (+)	873	WP_019726811.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
IAK_RS0125350	coaE	5404069..5404680 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
IAK_RS0125355	yacG	5404677..5404877 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
IAK_RS0125360	-	5404914..5405123 (-)	210	WP_003120946.1	hypothetical protein	-
IAK_RS0125365	-	5405229..5405918 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
IAK_RS0125370	-	5405915..5406385 (-)	471	WP_019486073.1	hypothetical protein	-
IAK_RS0125375	-	5406382..5406807 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
IAK_RS0125380	-	5406940..5407569 (+)	630	WP_019726812.1	DUF1780 domain-containing protein	-
IAK_RS0125385	-	5407566..5408015 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
IAK_RS32005	-	5408041..5408211 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31862.88 Da
• Isoelectric Point: 7.2974

>NTDB_id=64719 IAK_RS0125345 WP_019726811.1 5403200..5404072(+) (pilD) [Pseudomonas aeruginosa 213BR]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWQFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=64719 IAK_RS0125345 WP_019726811.1 5403200..5404072(+) (pilD) [Pseudomonas aeruginosa 213BR]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCAATTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.671	99.655	0.545
pilD	Vibrio campbellii strain DS40M4	53.147	98.621	0.524
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476