Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHQ36_RS28045 Genome accession   NZ_CP107860
Coordinates   6225307..6226716 (-) Length   469 a.a.
NCBI ID   WP_327430649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6220307..6231716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS28020 (OHQ36_28035) - 6220411..6221058 (-) 648 WP_330306436.1 hypothetical protein -
  OHQ36_RS28025 (OHQ36_28040) - 6221046..6221597 (-) 552 WP_327430645.1 SigE family RNA polymerase sigma factor -
  OHQ36_RS28030 (OHQ36_28045) - 6221896..6222804 (-) 909 WP_330306437.1 A/G-specific adenine glycosylase -
  OHQ36_RS28035 (OHQ36_28050) - 6223118..6223927 (+) 810 WP_330306438.1 hypothetical protein -
  OHQ36_RS28040 (OHQ36_28055) disA 6224114..6225238 (-) 1125 WP_330306439.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHQ36_RS28045 (OHQ36_28060) radA/sms 6225307..6226716 (-) 1410 WP_327430649.1 DNA repair protein RadA Machinery gene
  OHQ36_RS28050 (OHQ36_28065) - 6226916..6228691 (+) 1776 WP_406501897.1 BACON domain-containing protein -
  OHQ36_RS28055 (OHQ36_28070) - 6228755..6229615 (-) 861 WP_330306441.1 hypothetical protein -
  OHQ36_RS28060 (OHQ36_28075) - 6229687..6230619 (+) 933 WP_330306442.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49785.98 Da        Isoelectric Point: 8.0022

>NTDB_id=647089 OHQ36_RS28045 WP_327430649.1 6225307..6226716(-) (radA/sms) [Streptomyces sp. NBC_00500]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=647089 OHQ36_RS28045 WP_327430649.1 6225307..6226716(-) (radA/sms) [Streptomyces sp. NBC_00500]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTACGGACGACGACTCCGGGCC
GCGTCACCACCTCCGCGGTGCCCATCGGACAGGTCGACGGCAGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGTCTCGTGCCCGGTGCGGTCGTCCTGGTCGCGGGCGAGCCGGGGGTCGGCAAGTCCACGCT
CCTGCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTATGTGACGGGTGAGGAGTCGGCGAGCCAGG
TGCGCCTTCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTACCTGGCCGCCGAAACCGACCTGGCCGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTGGACTCCGTGCAGACGGTCGCCTCCCCGGAGATCGACGGAGC
GCCCGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGAGCGCTCATCCGCGCCTCCAAGGACCGCGGCATGTCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTGCTCGAACATCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTGGTCCGAGGGGTCAAGAACCGTTACGGGACCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCCGAACCGGTCCCGG
GCACTTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCACTCACGGTCGACTCGCAGATC
CCCTCCCCCCGTCGTACGACGTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGGCCG
GATCACCGCCCTCGGGAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCGCTCGCCCTCGCCTCCGCGGCGAGCGACACCCCACTCCCCAAAAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGAGTCCAGCGCCGGCTCGCCGAAGCCCACCGCCTGGGCTTCACGCACGCCCTCGT
ACCGACCGACCCGGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGACGCCCTGCGAGTCCTCC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409