Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   KB233_RS08230 Genome accession   NZ_CP090998
Coordinates   1769059..1769634 (-) Length   191 a.a.
NCBI ID   WP_235083086.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain BC1191     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764059..1774634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB233_RS08190 (KB233_08190) - 1764755..1764970 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  KB233_RS11850 - 1765074..1765190 (+) 117 WP_353955880.1 SAR1012 family small protein -
  KB233_RS08195 (KB233_08195) - 1765621..1765779 (+) 159 WP_001829449.1 hypothetical protein -
  KB233_RS08200 (KB233_08200) - 1765849..1766361 (-) 513 WP_224788133.1 LysE/ArgO family amino acid transporter -
  KB233_RS08205 (KB233_08205) - 1766469..1766810 (-) 342 WP_002456621.1 fatty acid desaturase -
  KB233_RS08210 (KB233_08210) - 1767023..1767259 (-) 237 WP_001829451.1 hypothetical protein -
  KB233_RS11855 (KB233_08215) mobV 1767461..1768021 (-) 561 Protein_1589 MobV family relaxase -
  KB233_RS08230 (KB233_08230) comK/comK1 1769059..1769634 (-) 576 WP_235083086.1 competence protein ComK Regulator
  KB233_RS08235 (KB233_08235) - 1769849..1770067 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  KB233_RS08240 (KB233_08240) - 1770145..1771131 (-) 987 WP_001829269.1 lipoate--protein ligase -
  KB233_RS08245 (KB233_08245) - 1771336..1771521 (+) 186 WP_001829339.1 YkvS family protein -
  KB233_RS08250 (KB233_08250) - 1771527..1772129 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  KB233_RS08255 (KB233_08255) - 1772232..1773737 (-) 1506 WP_001829277.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22798.87 Da        Isoelectric Point: 9.2887

>NTDB_id=647076 KB233_RS08230 WP_235083086.1 1769059..1769634(-) (comK/comK1) [Staphylococcus epidermidis strain BC1191]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=647076 KB233_RS08230 WP_235083086.1 1769059..1769634(-) (comK/comK1) [Staphylococcus epidermidis strain BC1191]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAATCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.216

96.859

0.738
  comK/comK1 Staphylococcus aureus N315

76.216

96.859

0.738