Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHQ36_RS07620 Genome accession   NZ_CP107860
Coordinates   1631559..1632227 (+) Length   222 a.a.
NCBI ID   WP_330302980.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1626559..1637227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS07595 (OHQ36_07585) mug 1627554..1628054 (+) 501 WP_330302975.1 G/U mismatch-specific DNA glycosylase -
  OHQ36_RS07600 (OHQ36_07590) - 1628056..1628499 (-) 444 WP_330302976.1 hypothetical protein -
  OHQ36_RS07605 (OHQ36_07595) - 1628609..1629334 (-) 726 WP_330302977.1 ABC transporter permease subunit -
  OHQ36_RS07610 (OHQ36_07600) - 1629337..1630272 (-) 936 WP_330302978.1 ABC transporter ATP-binding protein -
  OHQ36_RS07615 (OHQ36_07605) - 1630381..1631544 (+) 1164 WP_330302979.1 histidine kinase -
  OHQ36_RS07620 (OHQ36_07610) vraR 1631559..1632227 (+) 669 WP_330302980.1 response regulator transcription factor Regulator
  OHQ36_RS07625 (OHQ36_07615) - 1632350..1633507 (+) 1158 WP_330302981.1 ROK family transcriptional regulator -
  OHQ36_RS07630 (OHQ36_07620) - 1633592..1634353 (-) 762 WP_330302982.1 GntR family transcriptional regulator -
  OHQ36_RS07635 (OHQ36_07625) - 1634646..1635530 (-) 885 WP_330302983.1 RNA polymerase sigma-70 factor -
  OHQ36_RS07640 (OHQ36_07630) - 1635644..1636297 (+) 654 WP_330302984.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23540.14 Da        Isoelectric Point: 4.7428

>NTDB_id=647047 OHQ36_RS07620 WP_330302980.1 1631559..1632227(+) (vraR) [Streptomyces sp. NBC_00500]
MPVTVLLVDDEPLVRAGLRAVLEAQPDITVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVSDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGDGDGTGNPVARAAMERAALT
EREAEVLRLMARGLSNAEIAARLIVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=647047 OHQ36_RS07620 WP_330302980.1 1631559..1632227(+) (vraR) [Streptomyces sp. NBC_00500]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAACCCCTCGTACGCGCGGGTCTGCGCGCCGTCCTGGAGGCGCAGCCCGA
CATCACGGTCGTCGGGGAGGCGGCCGACGGTGCGGCGGTGATCCCCCTGGTGCGGCAGCTGCGGCCCGACGTGGTCGCCA
TGGACGTACGCATGCCCCTCCTGGACGGCATCGAGGCCACGCGCGCGGTGCTGCGCACCGTGAGCGATCCGCCGAAGATC
CTCGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACGAGGCGCTGCGGGCGGGTGCCGACGGGTTTCTGCTGAAGCG
GGCGCGGCCCGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAGGGCGAGTCGCTGTTGTTTCCCGCCTCCGTACGGC
AGTTGGCCGCCGAGTACGGGGACGGGGACGGCACCGGGAATCCGGTGGCGCGGGCGGCCATGGAGCGGGCCGCGCTGACC
GAGCGGGAGGCGGAGGTGCTGCGGCTGATGGCCCGGGGGCTGTCGAACGCGGAGATCGCCGCGCGGCTGATCGTCGGGAC
CGAGACGGTGAAGTCCCACGTCAGCGCCGTACTGGCGAAGCTGGGTGCGCGGGATCGTACGCAGGCGGTCATCGCGGCGT
ACGAGTCGGGGTTCGTGGCGCCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.271

99.55

0.401
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.365