Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS33595 Genome accession   NZ_CP107855
Coordinates   7371117..7371797 (-) Length   226 a.a.
NCBI ID   WP_330300042.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7366117..7376797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS33575 (OG490_33545) - 7366198..7368051 (-) 1854 WP_330300039.1 GNAT family N-acetyltransferase -
  OG490_RS33580 (OG490_33550) - 7368155..7368577 (+) 423 WP_330300040.1 DUF350 domain-containing protein -
  OG490_RS33585 (OG490_33555) - 7368690..7369940 (-) 1251 WP_330301163.1 acyltransferase -
  OG490_RS33590 (OG490_33560) - 7369946..7370989 (-) 1044 WP_330300041.1 alpha/beta hydrolase -
  OG490_RS33595 (OG490_33565) vraR 7371117..7371797 (-) 681 WP_330300042.1 response regulator transcription factor Regulator
  OG490_RS33600 (OG490_33570) - 7371794..7373131 (-) 1338 WP_330300043.1 sensor histidine kinase -
  OG490_RS33605 (OG490_33575) - 7373219..7374166 (+) 948 WP_330300044.1 AEC family transporter -
  OG490_RS33610 (OG490_33580) - 7374208..7374600 (+) 393 WP_330300045.1 hypothetical protein -
  OG490_RS33615 (OG490_33585) - 7374554..7375471 (-) 918 WP_330300046.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24342.15 Da        Isoelectric Point: 5.7044

>NTDB_id=647031 OG490_RS33595 WP_330300042.1 7371117..7371797(-) (vraR) [Streptomyces sp. NBC_00503]
MTIRVIIVDDQAMVRAGFAALLSAQPDIDVVGEAPDGRQGVQVSRTVHPDVVLMDVRMPEMDGLSAARELLDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVDRRPAPRRNPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLGKLDLRDRAQAVIFAYEAGLVRPGDGG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=647031 OG490_RS33595 WP_330300042.1 7371117..7371797(-) (vraR) [Streptomyces sp. NBC_00503]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCGCTGTTGTCCGCGCAGCCCGA
CATCGACGTGGTGGGCGAGGCCCCGGACGGACGCCAGGGCGTCCAGGTCTCCCGCACCGTCCACCCCGACGTGGTCCTGA
TGGACGTGCGGATGCCGGAGATGGACGGGCTCAGCGCCGCCCGCGAGCTCCTCGATCCCCCGCCGGGGGTGGTGCACCGG
CCCAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCCCTGCGCGCCGGAGCCTCCGGGTTCCT
GCTCAAGGACGCCCCGCCGGCCGATCTGATCGCGGCGGTCCGGGTGGTCGCCTCGGGCGAGGCCCTGCTGGCCCCTTCGG
TGACCCGGCGGCTGATCGCGGACTTCGTCGACCGGCGGCCCGCGCCGCGCAGGAACCCGGCGCTGCGGCTGAACGGGCTG
ACCCCGCGCGAGACGGAGGTACTGGAACTCATCGCGCGCGGGCTGTCGAACCAGGAGATCGCCGGCCACCTGGTGCTCGC
CGAGCAGACGGTCAAGACCCACATCGGGCGGGTGCTGGGCAAGCTGGACCTCCGGGACCGGGCCCAGGCCGTGATCTTCG
CCTACGAGGCCGGGCTGGTCCGGCCGGGCGACGGCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.724

97.788

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

100

0.381