Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS29800 Genome accession   NZ_CP107855
Coordinates   6527931..6528566 (-) Length   211 a.a.
NCBI ID   WP_330299354.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6522931..6533566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS29785 (OG490_29750) aceB 6523617..6525236 (-) 1620 WP_330299352.1 malate synthase A -
  OG490_RS29790 (OG490_29755) - 6525509..6526090 (-) 582 WP_330301123.1 nucleotidyltransferase family protein -
  OG490_RS29795 (OG490_29760) - 6526418..6527905 (+) 1488 WP_330299353.1 PLP-dependent aminotransferase family protein -
  OG490_RS29800 (OG490_29765) vraR 6527931..6528566 (-) 636 WP_330299354.1 response regulator transcription factor Regulator
  OG490_RS29805 (OG490_29770) - 6528566..6529804 (-) 1239 WP_330299355.1 sensor histidine kinase -
  OG490_RS29810 (OG490_29775) - 6529939..6531030 (+) 1092 WP_330299356.1 ABC transporter permease -
  OG490_RS29815 (OG490_29780) - 6531027..6531710 (+) 684 WP_330299357.1 ABC transporter ATP-binding protein -
  OG490_RS29820 (OG490_29785) - 6531829..6532632 (-) 804 WP_330299358.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22024.36 Da        Isoelectric Point: 5.6627

>NTDB_id=647023 OG490_RS29800 WP_330299354.1 6527931..6528566(-) (vraR) [Streptomyces sp. NBC_00503]
MTIRLLLADDHPVVRAGLRAVLDTESDFAVVAEAATAERAVELAASAGVDVVLMDLQFGPGPGMHGSEATALITARPAAP
RVLVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVA
DGLSNQQISKQLFLSQATVKSHLVHIYAKLGVDSRTSAVAAAATRRLIRTP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=647023 OG490_RS29800 WP_330299354.1 6527931..6528566(-) (vraR) [Streptomyces sp. NBC_00503]
ATGACCATCCGGCTGCTGCTCGCCGACGACCACCCGGTGGTCCGGGCCGGGCTGCGCGCGGTACTGGACACCGAGTCGGA
CTTCGCGGTGGTGGCGGAGGCCGCGACCGCGGAGCGCGCGGTGGAGCTGGCGGCCTCCGCGGGGGTGGACGTGGTCCTGA
TGGACCTCCAGTTCGGCCCCGGACCCGGTATGCACGGCTCGGAGGCCACGGCCCTGATCACGGCCCGGCCCGCGGCCCCC
CGGGTGCTGGTCCTGACCACCTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCCGGCGCCTCGGGCTACCTGCT
CAAGGACGCCCCGCCGGAGGAACTCGCGGCGGCCGTGCGCACCGCGGCGGCGGGCCAGTCGGCCCTGGCCCCGGCGGTGG
CCCTGCGCCTGATGGACCGCATGCGGACGCCCGCGGAAGCCCTGACCAAGCGCGAGCTGGAGGTCCTCCAGCTGGTCGCG
GACGGCCTGTCGAACCAGCAGATCTCCAAGCAGCTCTTCCTGAGCCAGGCCACGGTCAAGTCCCACCTGGTCCACATCTA
CGCCAAACTCGGCGTCGACTCCCGCACCTCGGCAGTAGCCGCAGCCGCCACCCGCCGCCTGATCCGCACGCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-201)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.679

100

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

34.545

100

0.36