Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS26870 Genome accession   NZ_CP107855
Coordinates   5781724..5782425 (-) Length   233 a.a.
NCBI ID   WP_330298829.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5776724..5787425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS26850 (OG490_26830) - 5777014..5778453 (+) 1440 WP_330298826.1 gamma-aminobutyraldehyde dehydrogenase -
  OG490_RS26855 (OG490_26835) - 5778595..5779773 (+) 1179 WP_330301082.1 spermidine/putrescine ABC transporter substrate-binding protein -
  OG490_RS26860 (OG490_26840) - 5779861..5780349 (+) 489 WP_330298827.1 hypothetical protein -
  OG490_RS26865 (OG490_26845) - 5780353..5781576 (-) 1224 WP_330298828.1 serine hydrolase domain-containing protein -
  OG490_RS26870 (OG490_26850) vraR 5781724..5782425 (-) 702 WP_330298829.1 response regulator transcription factor Regulator
  OG490_RS26875 (OG490_26855) - 5782422..5783561 (-) 1140 WP_330301083.1 histidine kinase -
  OG490_RS26880 (OG490_26860) - 5783675..5784364 (-) 690 WP_330298830.1 glycerophosphodiester phosphodiesterase -
  OG490_RS26885 (OG490_26865) - 5784386..5785411 (-) 1026 WP_330298831.1 adenosine deaminase -
  OG490_RS26890 (OG490_26870) - 5785520..5786248 (+) 729 WP_330298832.1 DUF4190 domain-containing protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 24519.86 Da        Isoelectric Point: 4.5275

>NTDB_id=647015 OG490_RS26870 WP_330298829.1 5781724..5782425(-) (vraR) [Streptomyces sp. NBC_00503]
MTIRVVVADDQELVRSGFAMILDVQEDIEVVAEVGDGAAAVAAVRDLAPDVALLDIRMPVLDGIEACRTISASSSCRTVM
LTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAATARPAAGEALSAERLEALTA
RERETLLHLGRGLSNAEIAGALTVSEHTVKSHVGNVLSKLGLRDRIQAVICAYETGLIAAGGPTGSWVSPSGE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=647015 OG490_RS26870 WP_330298829.1 5781724..5782425(-) (vraR) [Streptomyces sp. NBC_00503]
GTGACGATCCGTGTGGTGGTGGCCGACGACCAGGAGCTGGTGCGCAGCGGCTTCGCGATGATCCTGGACGTCCAGGAGGA
CATCGAGGTCGTGGCGGAGGTCGGGGACGGCGCGGCGGCGGTGGCCGCGGTACGGGACCTCGCGCCGGACGTGGCGCTGC
TGGACATCCGGATGCCGGTGCTGGACGGCATCGAGGCGTGCCGGACGATCTCGGCGAGCAGTTCCTGCCGGACGGTGATG
CTGACGACCTTCGACTCGGACGAGTACGTGTACGAGGCCCTGCACGCGGGGGCCAGCGGGTTCCTGCTCAAGGACGTGCG
GCGGGACGATCTGGTGCACGCGGTACGGGTGGTGGCCGCCGGCGATTCCCTGCTGGCGCCTTCGGTGGCCCGGCGCCTGA
TCGAGGAGTACACGGCGGCGACCGCCCGGCCGGCCGCCGGGGAGGCCCTGTCGGCCGAGCGCCTGGAGGCGCTGACGGCC
CGGGAGCGGGAGACGCTGCTGCACCTGGGGCGGGGGCTGTCGAACGCGGAGATCGCGGGGGCGCTGACGGTGAGCGAGCA
CACGGTCAAATCGCATGTGGGCAACGTGTTGTCGAAGCTGGGGCTGCGGGACCGGATCCAGGCGGTGATCTGCGCGTACG
AGACGGGTCTGATCGCGGCAGGCGGGCCGACTGGCTCTTGGGTATCTCCCTCTGGGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.553

93.991

0.391
  degU Bacillus subtilis subsp. subtilis str. 168

39.013

95.708

0.373