Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS25525 Genome accession   NZ_CP107855
Coordinates   5473073..5473717 (-) Length   214 a.a.
NCBI ID   WP_330298606.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5468073..5478717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS25505 (OG490_25480) atpD 5468374..5469813 (+) 1440 WP_330298603.1 F0F1 ATP synthase subunit beta -
  OG490_RS25510 (OG490_25485) - 5469943..5470317 (+) 375 WP_330298604.1 F0F1 ATP synthase subunit epsilon -
  OG490_RS25515 (OG490_25490) - 5470474..5470923 (+) 450 WP_330298605.1 DUF2550 domain-containing protein -
  OG490_RS25520 (OG490_25495) - 5471006..5472829 (-) 1824 WP_330301063.1 glycoside hydrolase family 18 chitinase -
  OG490_RS25525 (OG490_25500) vraR 5473073..5473717 (-) 645 WP_330298606.1 response regulator transcription factor Regulator
  OG490_RS25530 (OG490_25505) - 5473714..5474967 (-) 1254 WP_330298607.1 histidine kinase -
  OG490_RS25535 (OG490_25510) - 5475140..5475691 (+) 552 WP_330298608.1 hypothetical protein -
  OG490_RS25540 (OG490_25515) - 5475702..5476274 (-) 573 WP_330298609.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG490_RS25545 (OG490_25520) - 5476492..5477340 (+) 849 WP_330298610.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG490_RS25550 (OG490_25525) - 5477541..5477864 (+) 324 WP_031150506.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22605.13 Da        Isoelectric Point: 4.7609

>NTDB_id=647008 OG490_RS25525 WP_330298606.1 5473073..5473717(-) (vraR) [Streptomyces sp. NBC_00503]
MTIRVVVAEDQSAVRAGLVLILRSAGDIEVAGEAADGEEAVRLARELRPDLVLMDVQMPRLDGVSATRQVVEEGLADVLV
LTTFDLDEYVFGALRAGASGFLLKNAEAAELIGAVRTVARGEGLIAPAVTRRLIAEFAAPKPVRACVPAEVDSLTPRERE
VLGALGEGLSNAEIAARLEMAEATVKSHVSRLLGKLGLRSRLQAAVLAQELGLH

Nucleotide


Download         Length: 645 bp        

>NTDB_id=647008 OG490_RS25525 WP_330298606.1 5473073..5473717(-) (vraR) [Streptomyces sp. NBC_00503]
ATGACGATCAGGGTCGTGGTGGCGGAGGACCAGAGCGCGGTACGGGCCGGGCTGGTGCTGATCCTGCGCAGCGCGGGCGA
CATCGAGGTGGCGGGCGAGGCGGCGGACGGGGAGGAGGCGGTGCGCCTGGCCCGGGAACTGCGGCCGGACCTGGTGCTGA
TGGACGTGCAGATGCCGCGCCTGGACGGGGTCTCGGCGACCCGGCAGGTGGTCGAGGAGGGGCTGGCGGACGTGCTGGTG
CTGACCACCTTCGACCTGGACGAGTACGTCTTCGGGGCCCTGCGCGCGGGGGCTTCGGGCTTCCTGCTGAAGAACGCGGA
GGCGGCGGAGCTGATCGGGGCGGTACGGACCGTCGCGCGCGGGGAGGGCCTGATCGCCCCGGCGGTGACCCGGCGGCTGA
TCGCGGAGTTCGCGGCTCCCAAGCCCGTACGGGCCTGCGTGCCGGCGGAGGTGGATTCGCTGACCCCGCGGGAGCGGGAG
GTGCTGGGCGCGCTGGGTGAGGGCCTGTCGAACGCGGAGATCGCGGCGCGTCTGGAGATGGCGGAGGCCACGGTGAAATC
GCACGTCAGCAGGTTGCTGGGGAAGCTGGGGCTGCGCAGTCGGCTCCAAGCAGCGGTGCTGGCTCAGGAGTTGGGGCTCC
ACTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

100

0.402
  degU Bacillus subtilis subsp. subtilis str. 168

38.288

100

0.397