Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG490_RS21300 Genome accession   NZ_CP107855
Coordinates   4584425..4585840 (-) Length   471 a.a.
NCBI ID   WP_330297895.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4579425..4590840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS21275 (OG490_21250) - 4579646..4580206 (-) 561 WP_069920779.1 SigE family RNA polymerase sigma factor -
  OG490_RS21280 (OG490_21255) - 4580382..4581305 (-) 924 WP_330297891.1 A/G-specific adenine glycosylase -
  OG490_RS21285 (OG490_21260) - 4581335..4581943 (-) 609 WP_330297892.1 phosphatase PAP2 family protein -
  OG490_RS21290 (OG490_21265) - 4582114..4582935 (+) 822 WP_330297893.1 hypothetical protein -
  OG490_RS21295 (OG490_21270) disA 4583039..4584163 (-) 1125 WP_330297894.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG490_RS21300 (OG490_21275) radA/sms 4584425..4585840 (-) 1416 WP_330297895.1 DNA repair protein RadA Machinery gene
  OG490_RS21305 (OG490_21280) - 4586117..4587979 (+) 1863 WP_330297896.1 hypothetical protein -
  OG490_RS21310 (OG490_21285) - 4587992..4588864 (-) 873 WP_330297897.1 hypothetical protein -
  OG490_RS21315 (OG490_21290) - 4588928..4589857 (+) 930 WP_330297898.1 Ppx/GppA phosphatase family protein -
  OG490_RS21320 (OG490_21295) - 4590377..4590789 (-) 413 Protein_4192 HAD family hydrolase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49307.39 Da        Isoelectric Point: 7.6866

>NTDB_id=646995 OG490_RS21300 WP_330297895.1 4584425..4585840(-) (radA/sms) [Streptomyces sp. NBC_00503]
MAARTSRSSAKDRPSYRCTECGYSTAKWLGRCPECQAWGTVEELGGAPAVRTTAAGRVTTAAVPIGQVDVRTATARSTGV
SELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTGEESASQVRLRADRINALSDHLFLAAETDLS
AVLGHLDAVNPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGTTDEVGCFELTDEGINGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAYRLGFTHALVPVDPGKVPAGMKVTEVADMGDALRVLPRGRSRTAEKDRDAG

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=646995 OG490_RS21300 WP_330297895.1 4584425..4585840(-) (radA/sms) [Streptomyces sp. NBC_00503]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGTTGTACCGAGTGCGGGTACTCCACCGCCAA
ATGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGCACCGTGGAGGAGCTGGGCGGCGCGCCCGCCGTGCGGACCACCG
CGGCGGGCCGGGTCACCACGGCCGCCGTGCCGATCGGGCAGGTCGACGTGCGGACGGCGACCGCGCGCAGCACCGGCGTC
AGCGAGCTGGACCGGGTGCTGGGCGGCGGGCTGGTCCCCGGGGCGGTCGTGCTGCTCGCGGGCGAACCGGGCGTCGGCAA
GTCCACGCTGCTCCTCGACGTCGCGGCCAAGGCCGCCTCCGAGGAGCACCGCACGCTCTACGTCACCGGCGAGGAGTCGG
CGAGCCAGGTCCGGCTGCGGGCCGACCGGATCAACGCGCTCAGCGACCACCTCTTCCTGGCCGCCGAGACCGATCTCTCC
GCCGTCCTCGGGCACCTCGACGCCGTGAACCCCTCGCTCCTGATCATGGACTCCGTACAGACGGTGGCCTCCCCCGAGAT
CGACGGCGCGCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAACGCGGGATGT
CCACGCTGCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTCGACGTCGTA
CTGAGCTTCGAGGGCGACCGGCACGCACGGCTGCGCCTCGTACGCGGTGTGAAGAACCGGTACGGCACCACGGACGAGGT
CGGCTGCTTCGAGCTCACCGACGAGGGCATCAACGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGCCGCGCCGAGG
CCGTCCCGGGCACCTGCCTGACGGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCCCTGACGGTGGAC
TCGCAGATCCCCTCGCCCCGCCGGACCACCTCGGGGCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTACTGGAGCA
GCGCGGCCGGATCACGGCGCTGGGCAAGCGGGACATCTACACCGCGACCGTGGGCGGCGTGAAGCTGACCGAGCCGGCCG
CCGACCTGGCCGTCGCGCTGGCGCTGGCCTCGGCCGCCAGCGACGTACCGCTCCCGAAGAACCTGGTCGCCATCGGCGAG
GTCGGGCTCGCGGGCGAGGTGCGGCGGGTGACGGGCGTCCAGCGGCGGCTCGCGGAGGCGTACCGGCTGGGCTTCACGCA
CGCGCTGGTGCCGGTGGATCCGGGGAAGGTGCCGGCCGGGATGAAGGTGACCGAGGTCGCCGACATGGGCGACGCGCTAC
GGGTCCTGCCGCGCGGCCGGTCGCGTACGGCGGAGAAGGACCGGGACGCGGGCTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(83-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.826

96.178

0.412
  radA Streptococcus pneumoniae Rx1

43.868

90.021

0.395
  radA Streptococcus pneumoniae D39

43.868

90.021

0.395
  radA Streptococcus pneumoniae R6

43.868

90.021

0.395
  radA Streptococcus pneumoniae TIGR4

43.868

90.021

0.395
  radA Streptococcus mitis SK321

43.868

90.021

0.395
  radA Streptococcus mitis NCTC 12261

43.868

90.021

0.395