Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS17035 Genome accession   NZ_CP107855
Coordinates   3655748..3656368 (+) Length   206 a.a.
NCBI ID   WP_330297157.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650748..3661368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS17010 (OG490_16985) - 3650863..3651438 (+) 576 WP_330297153.1 TerD family protein -
  OG490_RS17015 (OG490_16990) - 3651557..3652084 (+) 528 WP_330297154.1 GNAT family N-acetyltransferase -
  OG490_RS17020 (OG490_16995) - 3652131..3653564 (-) 1434 WP_330297155.1 M1 family metallopeptidase -
  OG490_RS17025 (OG490_17000) - 3653605..3654144 (-) 540 WP_330297156.1 heme-binding protein -
  OG490_RS17030 (OG490_17005) - 3654588..3655751 (+) 1164 WP_330300959.1 sensor histidine kinase -
  OG490_RS17035 (OG490_17010) vraR 3655748..3656368 (+) 621 WP_330297157.1 response regulator transcription factor Regulator
  OG490_RS17040 (OG490_17015) - 3656468..3656971 (+) 504 WP_330297158.1 hypothetical protein -
  OG490_RS17045 (OG490_17020) - 3657027..3657701 (-) 675 WP_330297159.1 pentapeptide repeat-containing protein -
  OG490_RS17050 (OG490_17025) - 3657886..3658878 (+) 993 WP_330300960.1 zinc-binding dehydrogenase -
  OG490_RS17055 (OG490_17030) - 3658910..3659383 (-) 474 WP_330297160.1 GNAT family N-acetyltransferase -
  OG490_RS17060 (OG490_17035) - 3659452..3660408 (-) 957 WP_330297161.1 aminoglycoside phosphotransferase family protein -
  OG490_RS17065 (OG490_17040) - 3660418..3661143 (-) 726 WP_330297162.1 thioredoxin domain-containing protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21841.07 Da        Isoelectric Point: 5.9370

>NTDB_id=646981 OG490_RS17035 WP_330297157.1 3655748..3656368(+) (vraR) [Streptomyces sp. NBC_00503]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLRPDVVLMDLQLGEGIDGVEATRRITAGHNPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFSAIHSAAQGRTTLSPPVASRVMAHMRGTRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 621 bp        

>NTDB_id=646981 OG490_RS17035 WP_330297157.1 3655748..3656368(+) (vraR) [Streptomyces sp. NBC_00503]
ATGACGACGATCCTCCTGTGCGACGACCACGTCGTGGTCCGCGCCGGGCTGCTCGCCCTCCTCGGCAGCGAACCGGACAT
CGAGGTCCTCGGCGAGGCCGGCAGCGGCGAGGAGGCGGTCGCGCTCGCGGCGAAGCTCCGCCCCGACGTGGTCCTCATGG
ACCTCCAGCTCGGCGAGGGCATCGACGGGGTCGAGGCCACGCGCCGCATCACGGCGGGCCACAACCCGCCCCACGTCCTG
GTCCTGACCACCTACGACACGGACGCGGACATCACCCGGGCCATCGGCGCGGGCGCCACCGGCTACCTCCTCAAGGCCGA
GCGCCCTGAGGAGCTGTTCTCCGCGATCCACTCGGCGGCGCAGGGCCGCACCACCCTCTCCCCGCCCGTGGCCAGCCGCG
TGATGGCCCACATGCGCGGAACCCGCCCCACCCTGACGGACCGTGAACTCGACATCCTCGGCCAGCTGGCCCGCGGCCTC
GGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAAGCCACGGTCAAGACCCACCTGGGCCGCATCTACGACAAACT
CGGCGTCGACACCCGCGCGGGCGCGGTGGCCGTGGCCAAGGAGCAGCGCCTCCTCCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(144-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.024

99.515

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

35.023

100

0.369