Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KB226_RS08125 Genome accession   NZ_CP090985
Coordinates   1665613..1666008 (-) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 50D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1660613..1671008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB226_RS08100 (KB226_08100) thiE 1661354..1661992 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  KB226_RS08105 (KB226_08105) thiM 1661998..1662786 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  KB226_RS08110 (KB226_08110) thiD 1662779..1663600 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KB226_RS08115 (KB226_08115) tenA 1663593..1664282 (-) 690 WP_001829894.1 thiaminase II -
  KB226_RS08120 (KB226_08120) - 1664566..1665225 (-) 660 WP_235063537.1 transglycosylase family protein -
  KB226_RS08125 (KB226_08125) ssb 1665613..1666008 (-) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  KB226_RS08130 (KB226_08130) - 1666197..1666637 (+) 441 WP_001829935.1 YwpF-like family protein -
  KB226_RS08135 (KB226_08135) fabZ 1666955..1667392 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KB226_RS08140 (KB226_08140) murA 1667426..1668691 (-) 1266 WP_235075571.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KB226_RS08145 (KB226_08145) - 1668801..1669034 (-) 234 WP_002456242.1 DUF1146 family protein -
  KB226_RS08150 (KB226_08150) - 1669183..1669587 (-) 405 WP_235063536.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=646973 KB226_RS08125 WP_002457121.1 1665613..1666008(-) (ssb) [Staphylococcus epidermidis strain 50D]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=646973 KB226_RS08125 WP_002457121.1 1665613..1666008(-) (ssb) [Staphylococcus epidermidis strain 50D]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733