Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG490_RS12725 Genome accession   NZ_CP107855
Coordinates   2721559..2722230 (-) Length   223 a.a.
NCBI ID   WP_330296399.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2716559..2727230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS12715 (OG490_12700) - 2719062..2720033 (+) 972 WP_330296397.1 hypothetical protein -
  OG490_RS12720 (OG490_12705) clpX 2720119..2721405 (-) 1287 WP_330296398.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG490_RS12725 (OG490_12710) clpP 2721559..2722230 (-) 672 WP_330296399.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG490_RS12730 (OG490_12715) - 2722313..2722930 (-) 618 WP_250739480.1 ATP-dependent Clp protease proteolytic subunit -
  OG490_RS12735 (OG490_12720) tig 2723228..2724631 (-) 1404 WP_330296400.1 trigger factor -
  OG490_RS12750 (OG490_12735) - 2725243..2725479 (+) 237 WP_330296401.1 hypothetical protein -
  OG490_RS12755 (OG490_12740) - 2725535..2725729 (-) 195 WP_330296402.1 hypothetical protein -
  OG490_RS12760 (OG490_12745) - 2725860..2726336 (-) 477 WP_330296403.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24479.92 Da        Isoelectric Point: 4.6524

>NTDB_id=646973 OG490_RS12725 WP_330296399.1 2721559..2722230(-) (clpP) [Streptomyces sp. NBC_00503]
MVNTQMHMNNLSPASGLYTGAPVDNRYVIPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMD
PDRDIYLYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAANEILRMRDQLENMLALHSSTPIEKIRDDIERDKILTAQDALAYGLIDQVVATRKTSN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=646973 OG490_RS12725 WP_330296399.1 2721559..2722230(-) (clpP) [Streptomyces sp. NBC_00503]
ATGGTGAACACCCAGATGCACATGAACAATCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCACCGGTGGACAACCGCTA
CGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCA
TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTACCTGTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCTCGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCCGGCGCCC
CCGGCAAGCGCATGGCGCTCCCGAACGCCCGCGTGCTGATCCACCAGCCCTCGGGCGGCACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGAACATGCTGGCCCTGCACTCCTCGACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCTCAGGACGCGCTGGCGTACGGCCTGATCGACC
AGGTCGTCGCGACCCGCAAGACTTCGAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.439

84.753

0.453
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.66

84.305

0.444
  clpP Streptococcus pneumoniae D39

48.168

85.65

0.413
  clpP Streptococcus pneumoniae R6

48.168

85.65

0.413
  clpP Streptococcus pneumoniae TIGR4

48.168

85.65

0.413
  clpP Streptococcus pneumoniae Rx1

48.168

85.65

0.413
  clpP Streptococcus mutans UA159

47.895

85.202

0.408
  clpP Streptococcus thermophilus LMG 18311

46.907

86.996

0.408
  clpP Streptococcus thermophilus LMD-9

46.907

86.996

0.408
  clpP Streptococcus pyogenes JRS4

46.842

85.202

0.399
  clpP Streptococcus pyogenes MGAS315

46.842

85.202

0.399
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

85.65

0.39
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

85.65

0.381