Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS08695 Genome accession   NZ_CP107855
Coordinates   1863216..1863890 (-) Length   224 a.a.
NCBI ID   WP_330295696.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1858216..1868890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS08665 (OG490_08650) - 1858405..1859175 (-) 771 WP_330300842.1 sulfite exporter TauE/SafE family protein -
  OG490_RS08670 (OG490_08655) - 1859275..1860252 (-) 978 WP_330295691.1 SPFH domain-containing protein -
  OG490_RS08675 (OG490_08660) - 1860337..1860768 (-) 432 WP_330295692.1 NfeD family protein -
  OG490_RS08680 (OG490_08665) - 1860849..1861643 (-) 795 WP_330295693.1 ABC transporter ATP-binding protein -
  OG490_RS08685 (OG490_08670) - 1861789..1862574 (+) 786 WP_330295694.1 hypothetical protein -
  OG490_RS08690 (OG490_08675) - 1862859..1863104 (-) 246 WP_330295695.1 chaplin -
  OG490_RS08695 (OG490_08680) vraR 1863216..1863890 (-) 675 WP_330295696.1 response regulator transcription factor Regulator
  OG490_RS08700 (OG490_08685) - 1863883..1865121 (-) 1239 WP_330295697.1 GAF domain-containing sensor histidine kinase -
  OG490_RS08705 (OG490_08690) - 1865770..1866450 (+) 681 WP_330295698.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24242.51 Da        Isoelectric Point: 5.9039

>NTDB_id=646962 OG490_RS08695 WP_330295696.1 1863216..1863890(-) (vraR) [Streptomyces sp. NBC_00503]
MADASGRSSSTGDSGIRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTDGIEAL
RRLRALANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAAAIRSVHAGHVLLQPEVAVTLLSEEGHPPSPGRG
GSLTDREREVLRHIADGRSNREIARSLVLSEKTVKTHVSNILMKLDVTDRTQAALWAVRHGLAE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=646962 OG490_RS08695 WP_330295696.1 1863216..1863890(-) (vraR) [Streptomyces sp. NBC_00503]
GTGGCTGACGCGTCCGGCCGGAGCAGCAGCACCGGCGACAGCGGCATAAGGGTGCTGCTCGTCGACGACCACCAGGTGGT
CCGCCGCGGACTGCGCACCTTCCTGGAGGTCCAGGAGGACATCGAGGTGGTCGGCGAGGCCTCCGACGGAGAAGAGGGCA
TCGCCCGCGCGGAGGAGCTGCGCCCCGACGTCATCCTGATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCCCTA
CGGAGGCTGCGCGCGCTGGCGAACCCGGCCCGCGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCCGC
CCTGCGCGCGGGCGCCGCCGGATACGTCTACAAGGACATCGACCCCGACGCCCTGGCCGCCGCCATCCGCTCGGTGCACG
CCGGTCACGTCCTCCTCCAGCCGGAGGTCGCGGTGACCCTGCTCTCCGAGGAGGGCCACCCGCCGTCCCCCGGCCGCGGG
GGCTCCCTGACCGACCGCGAGCGCGAGGTGCTCCGACACATAGCGGACGGGCGCTCGAACCGGGAGATCGCCCGCTCGCT
GGTCCTCTCGGAGAAGACGGTCAAGACGCACGTTTCGAACATCCTGATGAAGCTGGACGTCACCGACCGCACCCAGGCGG
CGCTCTGGGCGGTCAGACACGGACTCGCCGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(18-130)

Bacterial regulatory proteins, luxR family (GerE)

(162-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

93.304

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

40.265

100

0.406