Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS07100 Genome accession   NZ_CP107855
Coordinates   1523277..1523903 (+) Length   208 a.a.
NCBI ID   WP_330295429.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1518277..1528903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS07080 (OG490_07060) - 1519596..1520213 (-) 618 WP_330295425.1 vitamin K epoxide reductase family protein -
  OG490_RS07085 (OG490_07065) - 1520350..1521231 (+) 882 WP_330295426.1 ABC transporter ATP-binding protein -
  OG490_RS07090 (OG490_07070) - 1521228..1522067 (+) 840 WP_330295427.1 ABC transporter permease -
  OG490_RS07095 (OG490_07075) - 1522043..1523263 (+) 1221 WP_330295428.1 sensor histidine kinase -
  OG490_RS07100 (OG490_07080) vraR 1523277..1523903 (+) 627 WP_330295429.1 response regulator transcription factor Regulator
  OG490_RS07105 (OG490_07085) hisS 1524034..1525293 (-) 1260 WP_330295430.1 histidine--tRNA ligase -
  OG490_RS07110 (OG490_07090) - 1525304..1526014 (-) 711 WP_330295431.1 MBL fold metallo-hydrolase -
  OG490_RS07115 (OG490_07095) - 1526181..1526963 (+) 783 WP_330295432.1 peptidylprolyl isomerase -
  OG490_RS07120 (OG490_07100) - 1527155..1528384 (+) 1230 WP_330295433.1 DUF349 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22171.74 Da        Isoelectric Point: 6.2653

>NTDB_id=646959 OG490_RS07100 WP_330295429.1 1523277..1523903(+) (vraR) [Streptomyces sp. NBC_00503]
MIRILLADDHPVVREGLRGMLSAEPDLEVVGEASNGPQAEALAARLLPGLDLILMDLRMPGGDGVESIARITAAGLAVRV
VVLTTYEDDRDILRAVEAGAAGYLLKDMARAELADAVRAAVRGETVLAPSVAGRLVDRLRTRPSLPRLSEREVSVLRLVA
GGATNAEIGRQLFVAESTVKTHLLRVFAKLEVTDRTAAVTTAMRHGLL

Nucleotide


Download         Length: 627 bp        

>NTDB_id=646959 OG490_RS07100 WP_330295429.1 1523277..1523903(+) (vraR) [Streptomyces sp. NBC_00503]
ATGATCCGCATCCTGCTGGCCGACGACCACCCGGTGGTACGGGAGGGCCTGCGCGGCATGCTCAGCGCGGAGCCGGACCT
GGAGGTCGTCGGGGAGGCCTCGAACGGCCCCCAGGCGGAGGCCCTGGCCGCGCGGCTGCTCCCCGGCCTGGACCTGATCC
TGATGGACCTGCGGATGCCGGGCGGCGACGGCGTCGAGTCCATCGCGAGGATCACCGCGGCCGGGCTGGCGGTACGAGTG
GTGGTCCTGACCACGTACGAGGACGACCGGGACATCCTGCGGGCGGTGGAGGCGGGGGCCGCGGGCTACTTGCTGAAGGA
CATGGCCCGGGCGGAACTGGCGGACGCGGTGCGGGCTGCGGTGCGCGGCGAAACGGTCCTGGCCCCCTCGGTGGCCGGCC
GCCTGGTGGACCGCCTGCGCACCCGCCCGTCGCTGCCGCGGCTGTCGGAGCGCGAGGTGTCGGTGCTACGGCTGGTCGCC
GGGGGCGCGACGAACGCGGAGATCGGGCGGCAGCTGTTCGTAGCGGAGTCCACGGTGAAGACCCACCTGCTGCGGGTCTT
CGCGAAGCTGGAGGTCACGGACCGCACGGCGGCGGTGACGACGGCCATGCGGCACGGCCTGCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-201)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.308

100

0.423
  degU Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.361