Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS05765 Genome accession   NZ_CP107855
Coordinates   1232575..1233225 (+) Length   216 a.a.
NCBI ID   WP_330295197.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227575..1238225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS05740 (OG490_05730) - 1227919..1228692 (+) 774 WP_330295192.1 SDR family oxidoreductase -
  OG490_RS05745 (OG490_05735) - 1228725..1229510 (-) 786 WP_330295193.1 alpha/beta hydrolase -
  OG490_RS05750 (OG490_05740) - 1229590..1230339 (-) 750 WP_330295194.1 ABC transporter permease -
  OG490_RS05755 (OG490_05745) - 1230366..1231277 (-) 912 WP_330295195.1 ATP-binding cassette domain-containing protein -
  OG490_RS05760 (OG490_05750) - 1231386..1232570 (+) 1185 WP_330295196.1 histidine kinase -
  OG490_RS05765 (OG490_05755) vraR 1232575..1233225 (+) 651 WP_330295197.1 response regulator transcription factor Regulator
  OG490_RS05770 (OG490_05760) - 1233355..1234512 (+) 1158 WP_330295198.1 ROK family transcriptional regulator -
  OG490_RS05775 (OG490_05765) - 1234692..1235450 (-) 759 WP_330295199.1 GntR family transcriptional regulator -
  OG490_RS05780 (OG490_05770) - 1235749..1236642 (+) 894 WP_330295200.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23269.92 Da        Isoelectric Point: 4.9794

>NTDB_id=646956 OG490_RS05765 WP_330295197.1 1232575..1233225(+) (vraR) [Streptomyces sp. NBC_00503]
MPVTVLLVDDEPLVRAGLRAVLDAQPDIEVVGEAADGASVVPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRSVDSPPKI
LVVTTFENDEYVYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRQARTVLERAALTEREEAV
LRLMAKGLTNIEIARELIVGTETVKSHVSAILGKIGARDRTQAVITAYESGFVSPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=646956 OG490_RS05765 WP_330295197.1 1232575..1233225(+) (vraR) [Streptomyces sp. NBC_00503]
ATGCCGGTTACCGTACTGCTCGTCGACGACGAACCCCTGGTGCGCGCGGGTCTGCGCGCCGTCCTGGATGCCCAGCCCGA
CATCGAGGTGGTCGGCGAGGCCGCCGACGGCGCCTCCGTGGTCCCGCTCGTACGGCAGCTGCGACCGGATGTCGTCGCGA
TGGATGTCCGGATGCCGCTGCTCGACGGGATCGAGGCGACCCGGGCGGTCCTGCGGTCGGTGGACTCCCCGCCGAAGATC
CTCGTGGTCACCACCTTCGAGAACGACGAGTACGTCTACCAGGCACTGCGGGCGGGCGCGGACGGGTTCCTCCTGAAGAG
GGCCCGGCCGTCGGAGATCGTGCACGCGGTACGACTGGTCGCGGAAGGAGAGACGCTGCTCTTCCCCGCGGCGGTGCGCG
CCCTCGCCGCCGAGTACGGAAACCGGCAGGCCCGGACGGTTCTGGAGCGGGCCGCGCTGACCGAGCGCGAGGAGGCCGTG
CTGCGGCTGATGGCGAAGGGACTGACCAACATCGAGATCGCCCGCGAGCTGATCGTCGGGACGGAGACGGTGAAGTCCCA
CGTGAGCGCGATCCTGGGAAAGATCGGCGCACGCGACCGGACCCAGGCCGTGATCACCGCGTACGAGTCCGGGTTCGTGT
CCCCTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.654

99.074

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.37