Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA84_RS31165 Genome accession   NZ_CP107845
Coordinates   6890344..6891024 (-) Length   226 a.a.
NCBI ID   WP_266953126.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6885344..6896024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS31145 (OHA84_31080) - 6886726..6887148 (+) 423 WP_266953118.1 DUF350 domain-containing protein -
  OHA84_RS31150 (OHA84_31085) - 6887201..6887839 (-) 639 WP_266968626.1 hypothetical protein -
  OHA84_RS31155 (OHA84_31090) - 6887968..6889179 (-) 1212 WP_266968624.1 acyltransferase -
  OHA84_RS31160 (OHA84_31095) - 6889176..6890219 (-) 1044 WP_266953124.1 alpha/beta hydrolase -
  OHA84_RS31165 (OHA84_31100) vraR 6890344..6891024 (-) 681 WP_266953126.1 response regulator transcription factor Regulator
  OHA84_RS31170 (OHA84_31105) - 6891021..6892340 (-) 1320 WP_266968621.1 sensor histidine kinase -
  OHA84_RS31175 (OHA84_31110) - 6892360..6892485 (-) 126 WP_266953130.1 hypothetical protein -
  OHA84_RS31180 (OHA84_31115) - 6892491..6893033 (-) 543 WP_266968619.1 hypothetical protein -
  OHA84_RS31185 (OHA84_31120) - 6893148..6894125 (+) 978 WP_266953134.1 AEC family transporter -
  OHA84_RS31190 (OHA84_31125) - 6894122..6894754 (+) 633 WP_266968617.1 HXXEE domain-containing protein -
  OHA84_RS31195 (OHA84_31130) - 6894714..6895127 (+) 414 WP_266953138.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24418.38 Da        Isoelectric Point: 6.5015

>NTDB_id=646942 OHA84_RS31165 WP_266953126.1 6890344..6891024(-) (vraR) [Streptomyces sp. NBC_00513]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGREGVRVSRTVHPDVVLMDVRMPEMDGLTAARELLDPPRGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVRQRPAPRKDPALRLKGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGKVLAKLDLRDRAQAVIFAYEAGLVRPGDGA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=646942 OHA84_RS31165 WP_266953126.1 6890344..6891024(-) (vraR) [Streptomyces sp. NBC_00513]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCGCTGCTCTCGGCGCAGGCCGA
CATCGACGTGGTGGGCGAGGCTCCCGACGGCCGGGAGGGTGTGCGCGTCTCCCGCACGGTGCACCCCGACGTGGTGCTGA
TGGACGTGCGGATGCCGGAGATGGACGGACTGACGGCCGCCCGCGAGCTCCTCGATCCCCCGAGGGGCGTGGTGCACCGC
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCCGGCGCGTCCGGGTTCCT
GTTGAAGGACGCCCCGCCGGCCGACCTGATCGCGGCGGTCCGGGTGGTCGCCTCGGGCGAGGCGCTGCTGGCGCCGTCGG
TGACGCGGCGGCTGATCGCCGACTTCGTCCGGCAGCGGCCGGCGCCGCGCAAGGACCCGGCGCTGCGGCTGAAAGGGCTG
ACCCCGCGTGAGACCGAGGTGTTGGAGCTCATCGCGCGCGGGCTCTCGAACCAGGAGATCGCCGGGCATCTGGTGCTGGC
CGAGCAGACGGTGAAGACGCACATCGGCAAGGTGTTGGCCAAATTGGACCTGCGGGACCGGGCCCAGGCGGTGATCTTCG
CCTATGAAGCGGGGCTGGTGCGTCCCGGCGACGGCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.342

98.23

0.416
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

100

0.381