Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA84_RS28155 Genome accession   NZ_CP107845
Coordinates   6161475..6162104 (-) Length   209 a.a.
NCBI ID   WP_266969194.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6156475..6167104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS28140 (OHA84_28075) aceB 6157166..6158785 (-) 1620 WP_266950478.1 malate synthase A -
  OHA84_RS28145 (OHA84_28080) - 6159060..6159674 (-) 615 WP_266969198.1 NTP transferase domain-containing protein -
  OHA84_RS28150 (OHA84_28085) - 6159966..6161453 (+) 1488 WP_266969196.1 PLP-dependent aminotransferase family protein -
  OHA84_RS28155 (OHA84_28090) vraR 6161475..6162104 (-) 630 WP_266969194.1 response regulator transcription factor Regulator
  OHA84_RS28160 (OHA84_28095) - 6162101..6163285 (-) 1185 WP_266969192.1 sensor histidine kinase -
  OHA84_RS28165 (OHA84_28100) - 6163420..6164505 (+) 1086 WP_266950481.1 FtsX-like permease family protein -
  OHA84_RS28170 (OHA84_28105) - 6164502..6165185 (+) 684 WP_266950482.1 ABC transporter ATP-binding protein -
  OHA84_RS28175 (OHA84_28110) - 6165249..6166052 (-) 804 WP_053676799.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21938.38 Da        Isoelectric Point: 6.4936

>NTDB_id=646938 OHA84_RS28155 WP_266969194.1 6161475..6162104(-) (vraR) [Streptomyces sp. NBC_00513]
MTIRLLLADDHPVVRAGLRAVLDTEADFAVVAEAATAERAVELAASAGVDVVLMDLQFGPGMHGSQATALITARPEAPRV
LVLTTYDTDANILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRMPAEALTKRELEVLQLVADG
LSNQQISKRLFLSQATVKSHLVHVYAKLGVDSRTAAVAAAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=646938 OHA84_RS28155 WP_266969194.1 6161475..6162104(-) (vraR) [Streptomyces sp. NBC_00513]
ATGACCATCCGGCTGCTGCTCGCCGACGACCACCCGGTGGTCCGCGCGGGGCTGCGCGCGGTGCTGGACACCGAGGCGGA
CTTCGCGGTCGTCGCGGAGGCCGCCACCGCCGAGCGGGCGGTGGAGCTGGCCGCCTCGGCGGGGGTGGACGTGGTCCTGA
TGGACCTCCAGTTCGGGCCCGGTATGCACGGTTCGCAGGCCACGGCCCTGATCACGGCCCGGCCGGAGGCACCCCGGGTG
CTGGTGCTGACCACGTACGACACGGACGCGAACATCCTGGCCGCCGTGGAGGCGGGCGCCTCGGGCTACCTGCTCAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCGGCGGTCCGCACCGCGGCGGCCGGCCAGTCGGCGCTGGCCCCGGCGGTGGCGTTGC
GGCTGATGGACCGGATGCGGATGCCGGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTGCTCCAGCTGGTCGCGGACGGA
TTGTCGAACCAGCAGATCTCGAAGCGGCTCTTCCTCAGCCAGGCCACGGTCAAGTCCCACCTGGTGCACGTCTACGCGAA
GCTCGGCGTCGACTCCCGCACGGCGGCGGTCGCCGCGGCGGCCACCCGCCGGCTGATCCGCACCCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.619

100

0.378
  degU Bacillus subtilis subsp. subtilis str. 168

35.16

100

0.368