Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA84_RS17500 Genome accession   NZ_CP107845
Coordinates   3799730..3800329 (-) Length   199 a.a.
NCBI ID   WP_053676940.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3794730..3805329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS17480 (OHA84_17445) - 3795623..3796174 (-) 552 WP_053676978.1 SigE family RNA polymerase sigma factor -
  OHA84_RS17485 (OHA84_17450) - 3796611..3797687 (-) 1077 WP_266970874.1 aspartate-semialdehyde dehydrogenase -
  OHA84_RS17490 (OHA84_17455) - 3797684..3798958 (-) 1275 WP_053676938.1 aspartate kinase -
  OHA84_RS17495 (OHA84_17460) - 3799051..3799737 (-) 687 WP_053676939.1 DUF5063 domain-containing protein -
  OHA84_RS17500 (OHA84_17465) recR 3799730..3800329 (-) 600 WP_053676940.1 recombination mediator RecR Machinery gene
  OHA84_RS17505 (OHA84_17470) - 3800388..3800729 (-) 342 WP_266970871.1 YbaB/EbfC family nucleoid-associated protein -
  OHA84_RS17510 (OHA84_17475) - 3800985..3801710 (+) 726 WP_199826477.1 SLATT domain-containing protein -
  OHA84_RS17515 (OHA84_17480) - 3801872..3802522 (-) 651 WP_053676943.1 hypothetical protein -
  OHA84_RS17520 (OHA84_17485) - 3802681..3803346 (-) 666 WP_053676944.1 GntR family transcriptional regulator -
  OHA84_RS17525 (OHA84_17490) - 3803470..3804822 (-) 1353 WP_266970869.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21831.17 Da        Isoelectric Point: 5.1721

>NTDB_id=646907 OHA84_RS17500 WP_053676940.1 3799730..3800329(-) (recR) [Streptomyces sp. NBC_00513]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646907 OHA84_RS17500 WP_053676940.1 3799730..3800329(-) (recR) [Streptomyces sp. NBC_00513]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCCACCGACGTCCGTCGCCTCGCGCACGCGCTGCTCGAAGTGAAGGACAAGGTCC
GCTTCTGTGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGGATCTGCCGTGACCCCCGCCGCGACACGACGGTC
ATCTGTGTCGTGGAGGAGCCCAAGGACGTCGTCGCGGTCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTACTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGACCTGCGGATCCGTGAGCTGCTGACGCGCCTGGCGGACGGCA
CGGTGACCGAGCTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472