Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   L0M14_RS26135 Genome accession   NZ_CP090978
Coordinates   5718275..5718535 (+) Length   86 a.a.
NCBI ID   WP_235119358.1    Uniprot ID   -
Organism   Paenibacillus hexagrammi strain YPD9-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5713275..5723535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M14_RS26120 (L0M14_26120) - 5714214..5714585 (-) 372 WP_235119355.1 hypothetical protein -
  L0M14_RS26125 (L0M14_26125) - 5714692..5715462 (+) 771 WP_235119356.1 peptidylprolyl isomerase -
  L0M14_RS26130 (L0M14_26130) - 5715585..5718256 (+) 2672 Protein_5185 peptidase domain-containing ABC transporter -
  L0M14_RS26135 (L0M14_26135) rcrQ 5718275..5718535 (+) 261 WP_235119358.1 hypothetical protein Regulator
  L0M14_RS26140 (L0M14_26140) - 5718681..5719025 (+) 345 WP_235123038.1 SRPBCC domain-containing protein -
  L0M14_RS26145 (L0M14_26145) - 5719152..5720584 (-) 1433 Protein_5188 MATE family efflux transporter -
  L0M14_RS26150 (L0M14_26150) - 5720679..5721542 (-) 864 WP_235119359.1 aldo/keto reductase -
  L0M14_RS26155 (L0M14_26155) - 5721923..5722663 (+) 741 WP_235123077.1 AEC family transporter -
  L0M14_RS26160 (L0M14_26160) - 5722551..5722844 (+) 294 WP_235123039.1 AEC family transporter -
  L0M14_RS26165 (L0M14_26165) - 5722883..5723005 (-) 123 Protein_5192 carbohydrate ABC transporter permease -
  L0M14_RS26170 (L0M14_26170) - 5722995..5723141 (-) 147 Protein_5193 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 9876.28 Da        Isoelectric Point: 5.0365

>NTDB_id=646903 L0M14_RS26135 WP_235119358.1 5718275..5718535(+) (rcrQ) [Paenibacillus hexagrammi strain YPD9-1]
MNDPRILIFDEATSALDTESERIIQQNMDEMLRNRTTLIIAHRLSTIRNADLIVVLDQGTIAEMGTHEQLLLEKGIYHHL
VHQQSV

Nucleotide


Download         Length: 261 bp        

>NTDB_id=646903 L0M14_RS26135 WP_235119358.1 5718275..5718535(+) (rcrQ) [Paenibacillus hexagrammi strain YPD9-1]
ATGAACGACCCGCGCATCCTCATCTTCGATGAAGCCACGAGCGCCTTGGATACGGAGTCAGAGCGCATCATCCAGCAGAA
CATGGATGAGATGCTGCGGAACCGCACCACGCTGATTATAGCTCACAGACTCAGCACAATACGGAACGCCGATTTGATTG
TCGTGCTGGATCAAGGTACCATCGCAGAGATGGGCACGCACGAACAACTGCTGCTAGAGAAAGGCATCTACCATCACTTG
GTGCATCAGCAATCCGTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.381

97.674

0.512
  comA Streptococcus gordonii str. Challis substr. CH1

45.122

95.349

0.43
  comA Streptococcus mitis SK321

45.122

95.349

0.43
  comA Streptococcus mitis NCTC 12261

45.122

95.349

0.43
  rcrP Streptococcus mutans UA159

44.444

94.186

0.419
  comA Streptococcus pneumoniae TIGR4

43.902

95.349

0.419
  comA Streptococcus pneumoniae Rx1

43.902

95.349

0.419
  comA Streptococcus pneumoniae D39

43.902

95.349

0.419
  comA Streptococcus pneumoniae R6

43.902

95.349

0.419
  comA/nlmT Streptococcus mutans UA159

44.156

89.535

0.395