Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA84_RS16780 Genome accession   NZ_CP107845
Coordinates   3642602..3644020 (+) Length   472 a.a.
NCBI ID   WP_053678501.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3637602..3649020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS16760 (OHA84_16725) - 3637680..3638519 (-) 840 WP_053678369.1 sugar phosphate isomerase/epimerase -
  OHA84_RS16765 (OHA84_16730) - 3638695..3639624 (-) 930 WP_053678371.1 Ppx/GppA phosphatase family protein -
  OHA84_RS16770 (OHA84_16735) - 3639688..3640515 (+) 828 WP_053678373.1 hypothetical protein -
  OHA84_RS16775 (OHA84_16740) - 3640592..3642340 (-) 1749 WP_266971010.1 hypothetical protein -
  OHA84_RS16780 (OHA84_16745) radA/sms 3642602..3644020 (+) 1419 WP_053678501.1 DNA repair protein RadA Machinery gene
  OHA84_RS16785 (OHA84_16750) disA 3644204..3645328 (+) 1125 WP_053678377.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA84_RS16790 (OHA84_16755) - 3645389..3646198 (-) 810 WP_053678379.1 hypothetical protein -
  OHA84_RS16795 (OHA84_16760) - 3646359..3646967 (+) 609 WP_053678502.1 phosphatase PAP2 family protein -
  OHA84_RS16800 (OHA84_16765) - 3646997..3647914 (+) 918 WP_266971006.1 A/G-specific adenine glycosylase -
  OHA84_RS16805 (OHA84_16770) - 3648135..3648695 (+) 561 WP_053678383.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49364.62 Da        Isoelectric Point: 8.4942

>NTDB_id=646902 OHA84_RS16780 WP_053678501.1 3642602..3644020(+) (radA/sms) [Streptomyces sp. NBC_00513]
MAARTSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAAVPIGQVDVRTATARSTGVS
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADADHRTLYVTGEESASQVRLRADRIKALSDHLYLAAETDLSA
VLGHLDAVKPALLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVIEVADMGDALRVLPRGRSRTPAKDGAADRS

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=646902 OHA84_RS16780 WP_053678501.1 3642602..3644020(+) (radA/sms) [Streptomyces sp. NBC_00513]
ATGGCAGCCCGCACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGTTGTACCGAGTGCGGCTGGACGACCGCGAA
ATGGCTCGGGCGGTGTCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAAATGGGCGCGCCCGCCGTGCGGACCACCGCGG
CGGGTCGGGTCTCGACCGCGGCCGTGCCGATCGGCCAGGTCGACGTCAGGACGGCGACCGCGCGCAGCACGGGCGTGAGC
GAGCTGGACCGGGTCCTCGGCGGCGGTCTCGTGCCCGGGGCGGTCGTGCTGTTGGCGGGCGAGCCGGGCGTGGGCAAGTC
GACGCTGCTGTTGGACGTCGCGGCGAAGGCGGCCGACGCCGACCACCGGACGCTGTATGTGACGGGCGAGGAGTCGGCGA
GCCAGGTGCGCCTGCGGGCGGACCGGATCAAGGCGCTCAGCGACCACCTGTACCTGGCCGCGGAGACGGACCTGTCGGCC
GTGCTGGGTCACCTCGACGCCGTGAAGCCCGCGCTGCTGATCCTGGACTCCGTACAGACCATCGCCTCGCCCGAGATCGA
CGGGGCGCCCGGCGGCATGGCCCAGGTGCGCGAGGTCGCGGGCGCGCTGATCCGGGCGTCCAAGGAGCGCGGCATGTCCA
CGCTCCTCGTCGGCCACGTCACCAAGGACGGGGCCATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTCGACGTCGTCCTG
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGACTGGTGCGCGGTGTGAAGAACCGGTACGGCGCCACCGACGAGGTCGG
CTGCTTCGAACTCCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGTTGTTCCTGACCCGGCGCGCGGAGGCGG
TCCCCGGGACCTGTCTGACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGATTCA
CAGATCCCCTCGCCCCGGCGGACCACGTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACCGCGCTGGGCAAGCGGGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTGGCGCTGGCCTCGGCGGCGAGCGACGTGCCCCTCCCGAAGAACCTCGTCGCCATCGGGGAGGTC
GGTCTCGCGGGCGAGGTGCGGCGGGTGACCGGCGTCCAGCGGCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCACGC
GCTGGTGCCGAGCGACCCCGGCAAGGTGCCGGCGGGCATGAAGGTGATCGAGGTCGCGGACATGGGCGACGCGCTGCGGG
TCCTGCCGCGCGGGCGCTCGCGGACCCCCGCCAAGGACGGCGCGGCCGACAGGTCGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

95.975

0.419
  radA Streptococcus mitis SK321

42.857

96.398

0.413
  radA Streptococcus mitis NCTC 12261

42.857

96.398

0.413
  radA Streptococcus pneumoniae TIGR4

42.92

95.763

0.411
  radA Streptococcus pneumoniae R6

42.92

95.763

0.411
  radA Streptococcus pneumoniae Rx1

42.92

95.763

0.411
  radA Streptococcus pneumoniae D39

42.92

95.763

0.411