Detailed information NTG0646893

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHA84_RS13700
• Genome accession: NZ_CP107845
• Coordinates: 2933851..2935137 (-)
• Length: 428 a.a.
• NCBI ID: WP_053674927.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00513
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2928851..2940137

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHA84_RS13690 (OHA84_13665)	-	2929987..2932608 (-)	2622	WP_053674931.1	valine--tRNA ligase	-
OHA84_RS13695 (OHA84_13670)	-	2932804..2933769 (+)	966	WP_266971508.1	hypothetical protein	-
OHA84_RS13700 (OHA84_13675)	clpX	2933851..2935137 (-)	1287	WP_053674927.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHA84_RS13705 (OHA84_13680)	clpP	2935291..2935965 (-)	675	WP_053674925.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA84_RS13710 (OHA84_13685)	-	2936019..2936636 (-)	618	WP_053674923.1	ATP-dependent Clp protease proteolytic subunit	-
OHA84_RS13715 (OHA84_13690)	tig	2936934..2938340 (-)	1407	WP_053674921.1	trigger factor	-
OHA84_RS13730 (OHA84_13705)	-	2939016..2939228 (+)	213	WP_266971506.1	hypothetical protein	-
OHA84_RS13735 (OHA84_13710)	-	2939322..2939516 (-)	195	WP_053674919.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46957.85 Da
• Isoelectric Point: 4.8265

>NTDB_id=646893 OHA84_RS13700 WP_053674927.1 2933851..2935137(-) (clpX) [Streptomyces sp. NBC_00513]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIEASDQFHEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVRSNVNPTLVPRIVPKDQGPHEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=646893 OHA84_RS13700 WP_053674927.1 2933851..2935137(-) (clpX) [Streptomyces sp. NBC_00513]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAACTCGCGGAGACCT
CCGAGGTTCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTCGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCGACGGGTTCCGGCAAGACGCTGCTGGCGCAGA
CGCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTGAGCGGCGAGGGCGTGCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACGGCCTCCGTCCCGCCGCAGGGCGGGCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTCTTCATCGTGGGCGGCGCGTTCTCGGGTCTGGAGAAGATCATCGAGTCGCGCGCGGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCGACCAGTTCCACGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTGCCCGTGCTGACCTCCGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTGATCGAGCCGCGCAACGCCCTGGTCAAGCAGTACCAGCGGCTGTTCGAACTCGACGGTGT
GGAACTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCAGACGGGTGCGCGAGGCCTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTTCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
GCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCGCGGATCGTCCCGAAGGACCAGGGCCCGCACGAGAAGTC
GGCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.925	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516