Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHA84_RS13020 Genome accession   NZ_CP107845
Coordinates   2775257..2776390 (-) Length   377 a.a.
NCBI ID   WP_371591370.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2770257..2781390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS13010 (OHA84_12980) rcrP 2771493..2773226 (+) 1734 WP_053677787.1 ABC transporter ATP-binding protein Regulator
  OHA84_RS13015 (OHA84_12985) rcrQ 2773223..2775145 (+) 1923 WP_053677784.1 ABC transporter ATP-binding protein Regulator
  OHA84_RS13020 (OHA84_12990) rpoS 2775257..2776390 (-) 1134 WP_371591370.1 RNA polymerase sigma factor Regulator
  OHA84_RS13025 (OHA84_12995) - 2776602..2777372 (-) 771 WP_266971598.1 glucose 1-dehydrogenase -
  OHA84_RS13030 (OHA84_13000) - 2777439..2778128 (-) 690 WP_053677779.1 vancomycin high temperature exclusion protein -
  OHA84_RS13035 (OHA84_13005) - 2778369..2779240 (+) 872 Protein_2585 sirohydrochlorin chelatase -
  OHA84_RS13040 (OHA84_13010) - 2779295..2780608 (+) 1314 WP_053677775.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 42252.36 Da        Isoelectric Point: 5.2712

>NTDB_id=646892 OHA84_RS13020 WP_371591370.1 2775257..2776390(-) (rpoS) [Streptomyces sp. NBC_00513]
MSYPTLRCGAPVLGALEVAPVQTRTLTVNVSHPARADEPVEAQAEAVDDEPEVLELIEPVPEQRRRSADSGSGAGPSADL
FRQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGNTPGLDLQLTLDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYV
GRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERG
YEPTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDATSPMESAAFFLLREHLEAVLSTLGERE
RKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=646892 OHA84_RS13020 WP_371591370.1 2775257..2776390(-) (rpoS) [Streptomyces sp. NBC_00513]
GTGTCGTACCCCACACTGAGGTGCGGTGCCCCCGTCCTCGGAGCCCTGGAGGTCGCCCCCGTGCAGACCCGGACCCTGAC
CGTGAACGTGAGTCACCCCGCTCGGGCCGACGAACCCGTCGAGGCGCAAGCCGAAGCCGTCGACGACGAGCCCGAGGTCT
TGGAGCTGATCGAACCGGTGCCCGAGCAGCGCAGGCGCAGCGCGGACAGCGGGAGCGGGGCGGGACCCTCCGCCGACCTC
TTCCGACAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCGGCGGAGGAAGTGGACCTGGCGCGACGCGTCGA
GGCCGGACTGTTCGCCGAGGAGAAGCTGGGCAACACCCCCGGCCTCGACCTCCAACTCACCCTCGACCTGGACAAGCTCG
TCGTCATGGGACGGATGGCCAAACGCCGCCTCATCGAGTCCAACCTGCGCCTCGTCGTCTCCGTGGCCAAACGCTACGTG
GGCCGCGGGCTCACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGCCTGATCCGGGCCGTCGAGAAGTTTGACTACGC
CCGCGGCTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGA
CCATCCGCGTCCCCGTCCACGTCGTGGAACTGATCAACCGCGTCGTACGCGTCCAGCGCCGCATGCTCCAGGAACGCGGA
TACGAGCCCACCGCCGAAGAGGTCGCCGTCCACCTCGAACTGACCCCCGAGCGGGTCCTGGAGGTACTCCGTCTCGCCCA
GGAGCCGGTCTCCCTGCACGCCCCGGTGGGCGAGGAGGACGACGTGGCCCTCGGCGACCTCATCGAGGACGGGGACGCCA
CCTCGCCCATGGAGTCGGCCGCCTTCTTCCTGCTCCGCGAGCACCTGGAAGCCGTGCTCTCGACCCTCGGCGAGCGCGAA
CGCAAGGTCGTCCAACTGCGCTACGGCCTGGCCGACGGCCGGCCGCGCACCCTTGAGGAGATCGGCCGGATCTTCGGCGT
GACCCGCGAACGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCTCCGCG
GCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(79-112)

Sigma-70 region 3 (Sigma70_r3)

(223-299)

Sigma-70, region 4 (Sigma70_r4)

(312-364)

Sigma-70 region 2 (Sigma70_r2)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.378

87.003

0.369