Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA84_RS13015 Genome accession   NZ_CP107845
Coordinates   2773223..2775145 (+) Length   640 a.a.
NCBI ID   WP_053677784.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2768223..2780145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS12980 (OHA84_12950) - 2768365..2768598 (-) 234 WP_185301024.1 type II toxin-antitoxin system VapB family antitoxin -
  OHA84_RS13000 (OHA84_12970) - 2769495..2769800 (+) 306 WP_053677791.1 hypothetical protein -
  OHA84_RS13005 (OHA84_12975) - 2769885..2771333 (+) 1449 WP_053677789.1 FGGY family carbohydrate kinase -
  OHA84_RS13010 (OHA84_12980) rcrP 2771493..2773226 (+) 1734 WP_053677787.1 ABC transporter ATP-binding protein Regulator
  OHA84_RS13015 (OHA84_12985) rcrQ 2773223..2775145 (+) 1923 WP_053677784.1 ABC transporter ATP-binding protein Regulator
  OHA84_RS13020 (OHA84_12990) rpoS 2775257..2776390 (-) 1134 WP_371591370.1 RNA polymerase sigma factor Regulator
  OHA84_RS13025 (OHA84_12995) - 2776602..2777372 (-) 771 WP_266971598.1 glucose 1-dehydrogenase -
  OHA84_RS13030 (OHA84_13000) - 2777439..2778128 (-) 690 WP_053677779.1 vancomycin high temperature exclusion protein -
  OHA84_RS13035 (OHA84_13005) - 2778369..2779240 (+) 872 Protein_2585 sirohydrochlorin chelatase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69054.59 Da        Isoelectric Point: 5.1054

>NTDB_id=646891 OHA84_RS13015 WP_053677784.1 2773223..2775145(+) (rcrQ) [Streptomyces sp. NBC_00513]
MSGPGGRMMMGPTQRSMDFKGSGKRLLGQLAQDRVKLWGMVVAVIGSVAFTVVGPKILGHATDLVFAGIVGRQMPAGITK
QQALDDLRAKGQDGMADMLSGTAFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTVPISIFVAAKIGKKS
QPQFVAQWKTTGTLNAHIEEMYSGHNLVKVFGRQKESAAVFAAENEELYKASFKAQLVSGIMQPVMFFISNVNYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAEEQEPDAEVPERPESLRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRSGIGMVLQDTWL
FGGTIAENIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAADGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=646891 OHA84_RS13015 WP_053677784.1 2773223..2775145(+) (rcrQ) [Streptomyces sp. NBC_00513]
GTGAGCGGGCCCGGAGGACGAATGATGATGGGGCCGACCCAGCGGTCCATGGACTTCAAGGGGTCGGGCAAGCGGCTGCT
GGGGCAGCTCGCACAGGACCGGGTCAAGCTGTGGGGCATGGTCGTCGCCGTCATAGGCAGCGTCGCGTTCACGGTGGTCG
GCCCGAAGATCCTGGGTCATGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGGCAGATGCCCGCCGGGATCACGAAG
CAGCAGGCGCTGGACGACCTGCGCGCCAAGGGCCAGGACGGCATGGCGGACATGCTGTCCGGGACCGCCTTCACGCCGGG
GCAGGGCATCGACTTCGGTGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTGTTCACCCTCGCGGGTCTGCTGATGC
TGGTGGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACATCGG
GCAGACCCTCCAACAGACGATGGGGCAGTTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGATCTCGATCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACCACGGGCACGCTCAACGCGCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGGCGGCAGAAGGAGTCCGCGGCGGTCTTCGCCGCGGAGAACGAGGAGCTGTACAAGGCCTCGTTCA
AGGCGCAGTTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACGTCAACTACGTGCTGATCGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGCGTGGCCTCGGCGGAGCGGGTGTACGAGCTGCTCG
ACGCCGAGGAGCAGGAGCCGGACGCGGAGGTCCCGGAGCGTCCGGAGTCGCTGCGCGGCCAGGTCACCCTGGACAAGGTC
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGACGGTCGAGCCGGGTCACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGGAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TGGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAGCTGCGGAGCGGGATCGGCATGGTGCTCCAGGACACCTGGTTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCTTCGCGCGAGGTGACCCGCGAGGAGATCGAGGAGGCCGCGCG
GGCGGCGCACGCGGACCGGTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGCTGGACGACGAGGGCGCGGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAGGCGACC
AGTTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCCATGGCGCGTCTCGCGCACGGCCGTACGTCCTTCGTCAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGGTCGATCGTGGAGCAGGGCACCC
ACGAGGAGCTGTTGGCTGCGGACGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.777

96.563

0.394