Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA84_RS09955 Genome accession   NZ_CP107845
Coordinates   2101225..2101878 (-) Length   217 a.a.
NCBI ID   WP_053678658.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2096225..2106878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS09925 (OHA84_09895) - 2096552..2097322 (-) 771 WP_053678692.1 sulfite exporter TauE/SafE family protein -
  OHA84_RS09930 (OHA84_09900) - 2097413..2098390 (-) 978 WP_053678666.1 SPFH domain-containing protein -
  OHA84_RS09935 (OHA84_09905) - 2098498..2098923 (-) 426 WP_266951054.1 NfeD family protein -
  OHA84_RS09940 (OHA84_09910) - 2099046..2099840 (-) 795 WP_053678662.1 ABC transporter ATP-binding protein -
  OHA84_RS09945 (OHA84_09915) - 2099976..2100758 (+) 783 WP_266951051.1 hypothetical protein -
  OHA84_RS09950 (OHA84_09920) - 2100860..2101105 (-) 246 WP_053678690.1 chaplin -
  OHA84_RS09955 (OHA84_09925) vraR 2101225..2101878 (-) 654 WP_053678658.1 response regulator transcription factor Regulator
  OHA84_RS09960 (OHA84_09930) - 2101871..2103025 (-) 1155 WP_053678656.1 GAF domain-containing sensor histidine kinase -
  OHA84_RS09965 (OHA84_09935) - 2103496..2104209 (+) 714 WP_053678654.1 transglycosylase SLT domain-containing protein -
  OHA84_RS09970 (OHA84_09940) - 2104306..2106813 (-) 2508 WP_266974109.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23726.13 Da        Isoelectric Point: 5.9623

>NTDB_id=646882 OHA84_RS09955 WP_053678658.1 2101225..2101878(-) (vraR) [Streptomyces sp. NBC_00513]
MADTRIRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEAADGEEGIARAEELRPDVILMDVKMPVTDGIEALRRLREAANPA
RVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAQALLAQEGQGAASSRPGSLTDREREV
LSLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGIVDVRH

Nucleotide


Download         Length: 654 bp        

>NTDB_id=646882 OHA84_RS09955 WP_053678658.1 2101225..2101878(-) (vraR) [Streptomyces sp. NBC_00513]
GTGGCTGACACCCGGATCCGCGTCCTGCTGGTGGACGACCACCAGGTGGTCCGGCGCGGACTGCGCACCTTCCTGGAGGT
CCAGGAGGACATCGAGGTGGTCGGCGAGGCCGCCGACGGCGAGGAGGGCATCGCCCGCGCCGAGGAACTGCGCCCCGACG
TGATCCTGATGGACGTCAAGATGCCCGTCACCGATGGCATCGAGGCCCTGCGACGACTGCGCGAGGCGGCGAACCCGGCC
CGCGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGCGCGGGCGCGGCCGGCTACGTCTA
CAAGGACATCGACCCCGAAGCCCTCGCCGGCGCCATCCGCTCCGTCCACGCGGGCCACGTCCTCCTCCAGCCGGAGGTGG
CGCAGGCCCTGCTCGCCCAGGAGGGCCAGGGAGCCGCGTCGAGCCGCCCCGGCTCGCTGACCGACCGGGAACGGGAAGTG
CTCTCCCTCATCGCGGACGGCAGATCCAATCGGGAGATCGCCCGCGCGCTGGTCCTGTCGGAGAAGACGGTCAAGACCCA
CGTCTCGAACATCCTGATGAAACTGGACCTGTCCGATCGGACCCAGGCGGCGTTGTGGGCGGTCAGGCACGGAATCGTGG
ACGTCCGGCATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.673

95.853

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

39.474

100

0.415