Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA84_RS07295 Genome accession   NZ_CP107845
Coordinates   1539402..1540052 (+) Length   216 a.a.
NCBI ID   WP_053683255.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534402..1545052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS07270 (OHA84_07245) mug 1535063..1535602 (+) 540 WP_053683264.1 G/U mismatch-specific DNA glycosylase -
  OHA84_RS07275 (OHA84_07250) - 1535907..1536344 (-) 438 WP_266972547.1 hypothetical protein -
  OHA84_RS07280 (OHA84_07255) - 1536385..1537137 (-) 753 WP_266972545.1 ABC transporter permease -
  OHA84_RS07285 (OHA84_07260) - 1537187..1538113 (-) 927 WP_266972543.1 ATP-binding cassette domain-containing protein -
  OHA84_RS07290 (OHA84_07265) - 1538222..1539397 (+) 1176 WP_266972541.1 sensor histidine kinase -
  OHA84_RS07295 (OHA84_07270) vraR 1539402..1540052 (+) 651 WP_053683255.1 response regulator transcription factor Regulator
  OHA84_RS07300 (OHA84_07275) - 1540154..1541311 (+) 1158 WP_266972540.1 ROK family transcriptional regulator -
  OHA84_RS07305 (OHA84_07280) - 1542163..1542921 (-) 759 WP_053683251.1 GntR family transcriptional regulator -
  OHA84_RS07310 (OHA84_07285) - 1543276..1544175 (+) 900 WP_078999582.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23147.84 Da        Isoelectric Point: 5.1402

>NTDB_id=646877 OHA84_RS07295 WP_053683255.1 1539402..1540052(+) (vraR) [Streptomyces sp. NBC_00513]
MPVTVLLVDDEPLVRAGLRAVLEAQPDITVVGEAADGASVVPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRSVDSPPKI
LVVTTFENDEYVYQALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNHKARAVLERAALTEREEAV
LRLMARGLTNVEIAAELIIGTETVKSHVSAILAKLGARDRTQAVITAYESGFVAPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=646877 OHA84_RS07295 WP_053683255.1 1539402..1540052(+) (vraR) [Streptomyces sp. NBC_00513]
ATGCCGGTTACCGTACTGCTCGTCGATGACGAACCCCTGGTGCGCGCGGGTCTGCGCGCCGTCTTGGAAGCACAGCCCGA
CATCACCGTGGTGGGCGAGGCGGCCGACGGGGCCTCCGTGGTTCCTCTCGTCCGGCAGCTGCGACCGGACGTGGTCGCCA
TGGACGTGCGAATGCCGTTGCTGGACGGGATCGAGGCGACGCGGGCGGTTCTCCGGTCCGTGGACTCACCGCCGAAGATC
CTCGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACCAGGCTCTGCGGGCCGGAGCTGACGGCTTCCTGCTGAAGCG
GGCCCGACCCTCGGAGATCGTGCACGCGGTCCGACTCGTCGCGGAGGGCGAGACGCTGCTCTTCCCGGCCGCCGTGCGAG
CCCTGGCGGCGGAGTACGGAAATCACAAGGCGCGGGCGGTGTTGGAACGGGCCGCGCTGACCGAGCGAGAGGAGGCGGTG
CTCCGGTTGATGGCCCGCGGCTTGACCAATGTGGAGATCGCGGCGGAGCTGATCATCGGCACGGAGACCGTGAAGTCCCA
CGTCAGTGCGATCTTGGCGAAGCTGGGCGCACGCGACCGGACCCAGGCGGTCATCACCGCCTACGAGTCCGGATTCGTCG
CCCCGGCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.056

99.074

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366