Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN73_RS39320 Genome accession   NZ_CP107839
Coordinates   8462024..8462686 (-) Length   220 a.a.
NCBI ID   WP_266530773.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00519     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8457024..8467686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN73_RS39295 (OHN73_39175) - 8457642..8457935 (+) 294 WP_266530875.1 transposase family protein -
  OHN73_RS39300 (OHN73_39180) - 8458036..8458689 (-) 654 WP_266530779.1 NADPH-dependent F420 reductase -
  OHN73_RS39305 (OHN73_39185) - 8458801..8459685 (+) 885 WP_266530778.1 RNA polymerase sigma-70 factor -
  OHN73_RS39310 (OHN73_39190) - 8459876..8460637 (+) 762 WP_266530776.1 GntR family transcriptional regulator -
  OHN73_RS39315 (OHN73_39195) - 8460708..8461865 (-) 1158 WP_266530774.1 ROK family protein -
  OHN73_RS39320 (OHN73_39200) vraR 8462024..8462686 (-) 663 WP_266530773.1 response regulator transcription factor Regulator
  OHN73_RS39325 (OHN73_39205) - 8462701..8463858 (-) 1158 WP_266530771.1 sensor histidine kinase -
  OHN73_RS39330 (OHN73_39210) - 8463967..8464887 (+) 921 WP_266530769.1 ABC transporter ATP-binding protein -
  OHN73_RS39335 (OHN73_39215) - 8464890..8465612 (+) 723 WP_266530767.1 ABC transporter permease subunit -
  OHN73_RS39340 (OHN73_39220) - 8465654..8466064 (+) 411 WP_266530765.1 hypothetical protein -
  OHN73_RS39345 (OHN73_39225) mug 8466042..8466593 (-) 552 WP_266530873.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23684.27 Da        Isoelectric Point: 4.7964

>NTDB_id=646860 OHN73_RS39320 WP_266530773.1 8462024..8462686(-) (vraR) [Streptomyces sp. NBC_00519]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRLRPDVVAMDVRMPLLDGIEATRAVLRTVDEPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGESDGNRAARDAMERARLTER
EAEVLRLMARGLSNAEIAARLIVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=646860 OHN73_RS39320 WP_266530773.1 8462024..8462686(-) (vraR) [Streptomyces sp. NBC_00519]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAGCCCCTCGTACGCGCCGGTCTGCGGGCCGTTCTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGGGAGGCCGCCGACGGGGCGGCGGTGATCCCGCTCGTGCGCCGGCTGCGGCCCGACGTGGTCGCCA
TGGACGTACGGATGCCGCTGCTGGACGGCATCGAGGCCACGCGCGCGGTGCTGCGGACGGTCGACGAGCCGCCGAAGATC
CTCGTGGTGACGACGTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGGGCCGGCGCCGACGGGTTCCTGCTGAAGCG
GGCCCGCCCGGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCGGAGGGCGAGTCGCTGCTGTTCCCGGCCTCCGTGCGGC
AGTTGGCCGCCGAGTACGGCGAGAGCGACGGCAACCGGGCCGCCCGGGACGCGATGGAACGGGCCCGGCTGACCGAACGG
GAGGCCGAGGTGTTGCGGCTGATGGCCCGCGGGCTGTCCAACGCGGAGATCGCCGCCCGACTGATCGTCGGCACGGAGAC
AGTGAAGTCGCACGTGAGCGCCGTACTGGCGAAACTCGGCGCGCGTGATCGCACTCAGGCCGTGATCGCCGCGTACGAGT
CGGGCTTCGTGGCCCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.743

99.091

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.377