Detailed information NTG0064685

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IAI_RS0125590
• Genome accession: NZ_AFXJ01000001
• Coordinates: 5426354..5427226 (+)
• Length: 290 a.a.
• NCBI ID: WP_019726811.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa 19BR
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5421354..5432226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAI_RS0125565	nadC	5421725..5422573 (+)	849	WP_003116246.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IAI_RS0125575	-	5422726..5423199 (-)	474	WP_019727264.1	pilin	-
IAI_RS0125580	pilB	5423430..5425130 (+)	1701	WP_003120945.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IAI_RS0125585	pilC	5425134..5426351 (+)	1218	WP_010792214.1	type II secretion system F family protein	Machinery gene
IAI_RS0125590	pilD	5426354..5427226 (+)	873	WP_019726811.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
IAI_RS0125595	coaE	5427223..5427834 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
IAI_RS0125600	yacG	5427831..5428031 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
IAI_RS0125605	-	5428068..5428277 (-)	210	WP_003120946.1	hypothetical protein	-
IAI_RS0125610	-	5428383..5429072 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
IAI_RS0125615	-	5429069..5429539 (-)	471	WP_019486073.1	hypothetical protein	-
IAI_RS0125620	-	5429536..5429961 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
IAI_RS0125625	-	5430094..5430723 (+)	630	WP_019726812.1	DUF1780 domain-containing protein	-
IAI_RS0125630	-	5430720..5431169 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
IAI_RS0125635	-	5431195..5431365 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31862.88 Da
• Isoelectric Point: 7.2974

>NTDB_id=64685 IAI_RS0125590 WP_019726811.1 5426354..5427226(+) (pilD) [Pseudomonas aeruginosa 19BR]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWQFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=64685 IAI_RS0125590 WP_019726811.1 5426354..5427226(+) (pilD) [Pseudomonas aeruginosa 19BR]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCAATTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.671	99.655	0.545
pilD	Vibrio campbellii strain DS40M4	53.147	98.621	0.524
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476