Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L0B70_RS02050 Genome accession   NZ_CP090976
Coordinates   424529..425182 (+) Length   217 a.a.
NCBI ID   WP_235142664.1    Uniprot ID   -
Organism   Kaistella sp. 97-N-M2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419529..430182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B70_RS02020 (L0B70_02020) - 420249..420992 (-) 744 WP_235142660.1 DUF4230 domain-containing protein -
  L0B70_RS02025 (L0B70_02025) - 421041..421580 (-) 540 WP_235142661.1 hypothetical protein -
  L0B70_RS02030 (L0B70_02030) - 421593..422630 (-) 1038 WP_235143543.1 acyl transferase -
  L0B70_RS02035 (L0B70_02035) - 422667..423053 (-) 387 WP_235143544.1 GxxExxY protein -
  L0B70_RS02040 (L0B70_02040) - 423056..423859 (-) 804 WP_235142662.1 UDP-2,3-diacylglucosamine diphosphatase -
  L0B70_RS02045 (L0B70_02045) - 423931..424377 (-) 447 WP_235142663.1 6-carboxytetrahydropterin synthase -
  L0B70_RS02050 (L0B70_02050) comF 424529..425182 (+) 654 WP_235142664.1 ComF family protein Machinery gene
  L0B70_RS02055 (L0B70_02055) upp 425339..425989 (-) 651 WP_235142665.1 uracil phosphoribosyltransferase -
  L0B70_RS02060 (L0B70_02060) der 426071..427378 (-) 1308 WP_235142666.1 ribosome biogenesis GTPase Der -
  L0B70_RS02065 (L0B70_02065) - 427565..428119 (+) 555 WP_235142667.1 LemA family protein -
  L0B70_RS02070 (L0B70_02070) - 428124..430052 (+) 1929 WP_235142668.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25319.50 Da        Isoelectric Point: 9.2227

>NTDB_id=646844 L0B70_RS02050 WP_235142664.1 424529..425182(+) (comF) [Kaistella sp. 97-N-M2]
MFFLDLLFPNRCLDCNRIIHQNEVVCAACFDQIYFTHHHFDQTNLLKERCQLLFPVESAVALMQFEDESLSRKIIHQLKY
GGRPKVGKTLAQWVLEKTNLKELQPDLLVTVPLHRRKLRERGYNQLHLFADTLSEDLGIPCDHSLIKRNFYKKAQAKKNK
AQRDKSKNPFSITKEIRGKHILVIDDVFTTGKTMSDVVWEILKNPENRVSVLVMAMD

Nucleotide


Download         Length: 654 bp        

>NTDB_id=646844 L0B70_RS02050 WP_235142664.1 424529..425182(+) (comF) [Kaistella sp. 97-N-M2]
ATGTTTTTCCTAGATCTCCTTTTTCCGAACCGCTGTCTGGACTGCAACCGTATCATTCATCAAAATGAAGTGGTTTGCGC
AGCGTGTTTTGACCAGATTTATTTTACGCATCATCATTTTGATCAGACTAATTTGCTGAAGGAACGCTGCCAGCTTCTTT
TTCCTGTAGAAAGCGCCGTGGCGCTGATGCAGTTTGAAGATGAAAGTCTGAGCCGAAAAATAATTCACCAGTTAAAATAT
GGCGGCCGCCCAAAAGTTGGAAAAACCTTGGCGCAATGGGTTTTGGAGAAAACAAATTTGAAAGAGTTGCAACCCGATCT
CCTCGTAACGGTGCCACTTCACCGCCGGAAACTGAGAGAAAGAGGCTACAATCAGCTTCATTTGTTTGCCGATACTTTAT
CTGAAGATCTAGGGATTCCGTGCGATCATTCTTTAATCAAAAGAAATTTCTACAAAAAAGCGCAGGCGAAAAAGAATAAG
GCGCAGCGCGATAAAAGCAAAAATCCATTCAGCATCACGAAAGAAATCAGGGGCAAACATATCCTCGTTATCGATGATGT
TTTCACGACGGGAAAGACAATGAGCGATGTGGTTTGGGAAATTTTGAAAAATCCGGAGAACAGGGTTTCGGTGTTGGTGA
TGGCGATGGATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(129-204)

Double zinc ribbon domain (DZR_2)

(3-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.023

99.078

0.525