Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IAI_RS0117455 Genome accession   NZ_AFXJ01000001
Coordinates   3683192..3683827 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa 19BR     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678192..3688827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAI_RS0117425 murB 3679290..3680309 (-) 1020 WP_019726513.1 UDP-N-acetylmuramate dehydrogenase -
  IAI_RS0117430 - 3680306..3680770 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  IAI_RS0117435 kdsB 3680770..3681534 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IAI_RS0117440 - 3681534..3681719 (-) 186 WP_003091157.1 Trm112 family protein -
  IAI_RS0117445 lpxK 3681757..3682755 (-) 999 WP_019726514.1 tetraacyldisaccharide 4'-kinase -
  IAI_RS0117450 - 3682755..3683195 (-) 441 WP_019726515.1 biopolymer transporter ExbD -
  IAI_RS0117455 exbB 3683192..3683827 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IAI_RS0117460 comA 3683900..3686125 (-) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IAI_RS0117465 - 3686256..3686789 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  IAI_RS0117470 - 3686877..3688121 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=64675 IAI_RS0117455 WP_003091163.1 3683192..3683827(-) (exbB) [Pseudomonas aeruginosa 19BR]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=64675 IAI_RS0117455 WP_003091163.1 3683192..3683827(-) (exbB) [Pseudomonas aeruginosa 19BR]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment