Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS17_RS15555 Genome accession   NZ_CP107836
Coordinates   3450013..3450612 (-) Length   199 a.a.
NCBI ID   WP_018102117.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3445013..3455612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS17_RS15535 (OHS17_15560) - 3445757..3446332 (-) 576 WP_018102121.1 SigE family RNA polymerase sigma factor -
  OHS17_RS15540 (OHS17_15565) - 3446716..3447780 (-) 1065 WP_330312666.1 aspartate-semialdehyde dehydrogenase -
  OHS17_RS15545 (OHS17_15570) - 3447777..3449048 (-) 1272 WP_018102119.1 aspartate kinase -
  OHS17_RS15550 (OHS17_15575) - 3449261..3449920 (-) 660 WP_018102118.1 DUF5063 domain-containing protein -
  OHS17_RS15555 (OHS17_15580) recR 3450013..3450612 (-) 600 WP_018102117.1 recombination mediator RecR Machinery gene
  OHS17_RS15560 (OHS17_15585) - 3450692..3451030 (-) 339 WP_330315266.1 YbaB/EbfC family nucleoid-associated protein -
  OHS17_RS15565 (OHS17_15590) - 3451399..3452193 (+) 795 WP_330312667.1 SLATT domain-containing protein -
  OHS17_RS15570 (OHS17_15595) - 3452242..3452892 (-) 651 WP_018102114.1 hypothetical protein -
  OHS17_RS15575 (OHS17_15600) - 3453016..3453732 (-) 717 WP_161210846.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21888.14 Da        Isoelectric Point: 5.0142

>NTDB_id=646741 OHS17_RS15555 WP_018102117.1 3450013..3450612(-) (recR) [Streptomyces sp. NBC_00523]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEEECGICRDQRRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646741 OHS17_RS15555 WP_018102117.1 3450013..3450612(-) (recR) [Streptomyces sp. NBC_00523]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTGCTGCAGGCGGAGCCCACGGACGTGCGGCGCCTGGCCCACGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGTGCGGTCTGCGGCAACGTGGCCCAGGAGGAGGAGTGCGGGATCTGCCGTGATCAGCGCCGCGACCGGTCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAACGGACCCGTGAGTTCCGGGGGCGCTACCACGTGCTGGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTCCTCGCCCGCCTTGCCGACGGCT
CCATCACCGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGCGTCACCCGGCTCGCCAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGGCGGCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447