Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHS17_RS14670 Genome accession   NZ_CP107836
Coordinates   3257293..3258705 (+) Length   470 a.a.
NCBI ID   WP_330312548.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3252293..3263705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS17_RS14650 (OHS17_14670) - 3252471..3253298 (-) 828 WP_330312545.1 sugar phosphate isomerase/epimerase -
  OHS17_RS14655 (OHS17_14675) - 3253382..3254332 (-) 951 WP_018102289.1 Ppx/GppA phosphatase family protein -
  OHS17_RS14660 (OHS17_14680) - 3254374..3255246 (+) 873 WP_330312546.1 hypothetical protein -
  OHS17_RS14665 (OHS17_14685) - 3255275..3257158 (-) 1884 WP_330312547.1 hypothetical protein -
  OHS17_RS14670 (OHS17_14690) radA/sms 3257293..3258705 (+) 1413 WP_330312548.1 DNA repair protein RadA Machinery gene
  OHS17_RS14675 (OHS17_14695) disA 3258851..3259975 (+) 1125 WP_026171409.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS17_RS14680 (OHS17_14700) - 3260012..3260779 (-) 768 WP_330315259.1 hypothetical protein -
  OHS17_RS14685 (OHS17_14705) - 3261112..3262014 (+) 903 WP_330312549.1 A/G-specific adenine glycosylase -
  OHS17_RS14690 (OHS17_14710) - 3262321..3262869 (+) 549 WP_018102282.1 SigE family RNA polymerase sigma factor -
  OHS17_RS14695 (OHS17_14715) - 3262857..3263582 (+) 726 WP_161206639.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49592.70 Da        Isoelectric Point: 8.0123

>NTDB_id=646736 OHS17_RS14670 WP_330312548.1 3257293..3258705(+) (radA/sms) [Streptomyces sp. NBC_00523]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARPTGVSE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDEHRTLYVTGEESASQVRMRADRIHALSDHLYLAAETDLSAV
LAHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRALPRRTRAQAPREDDARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=646736 OHS17_RS14670 WP_330312548.1 3257293..3258705(+) (radA/sms) [Streptomyces sp. NBC_00523]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCGAAGTGGCT
CGGGCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGGACCACGGCCGCGG
GGCGGGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTGGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTGAGCGAG
CTGGACCGGGTGCTGGGCGGCGGTCTGGTGCCCGGGGCCGTCGTGCTGCTCGCCGGCGAACCGGGCGTCGGCAAGTCCAC
GCTGCTGCTGGACGTCGCGGCCAAGGCGGCGACCGACGAGCACCGCACGCTGTATGTGACGGGCGAGGAGTCCGCGTCCC
AGGTCCGGATGCGGGCCGACCGCATCCACGCGCTCAGCGACCACCTGTATCTGGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGCCCACCTCGACGCGGTGAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGAGGG
CGCGCCGGGCGGGATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGC
TGCTCGTGGGCCACGTCACCAAGGAGGGCGCGATCGCCGGGCCCCGGCTCCTGGAGCACCTGGTGGACGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGGCTGCGCCTGGTGCGCGGGGTCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGATCCGTCCGGCCTGTTCCTCACCCGGCGCGACGAGCCGGTGC
CCGGCACCTGCCTGACCGTGACGCTGGAGGGGAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGACTCGCAG
ATCCCGTCCCCCCGGCGGACCACGTCGGGCCTGGAGACCTCCCGGGTTTCGATGATGCTCGCGGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTGTCCGAGCCGGCCGCCGACC
TGGCGATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACACCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACGGGGGTGCAGCGCCGGCTGTCCGAGGCGCATCGGCTGGGGTTCACGCACGCCCT
GGTCCCGACCGATCCGGGCAAGGTCCCGGCCGGTATGAAGGTGACGGAAGTGGCCGACATGGGCGACGCGCTCAGGGCAC
TCCCGCGCCGGACCCGCGCACAGGCCCCCCGGGAGGACGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae D39

42.418

96.809

0.411
  radA Streptococcus pneumoniae R6

42.418

96.809

0.411
  radA Streptococcus pneumoniae Rx1

42.418

96.809

0.411
  radA Streptococcus pneumoniae TIGR4

42.418

96.809

0.411
  radA Streptococcus mitis SK321

44.056

91.277

0.402
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4