Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG710_RS16925 Genome accession   NZ_CP107834
Coordinates   3800298..3800960 (-) Length   220 a.a.
NCBI ID   WP_330240085.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3795298..3805960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS16900 (OG710_16925) - 3795396..3796463 (+) 1068 WP_330240080.1 peptidoglycan-binding protein -
  OG710_RS16905 (OG710_16930) - 3796460..3797200 (+) 741 WP_330240081.1 ABC transporter ATP-binding protein -
  OG710_RS16910 (OG710_16935) - 3797197..3798390 (+) 1194 WP_330240082.1 ABC transporter permease -
  OG710_RS16915 (OG710_16940) - 3798427..3799146 (-) 720 WP_330240083.1 GDSL-type esterase/lipase family protein -
  OG710_RS16920 (OG710_16945) - 3799206..3800207 (+) 1002 WP_330240084.1 WD40 repeat domain-containing protein -
  OG710_RS16925 (OG710_16950) vraR 3800298..3800960 (-) 663 WP_330240085.1 response regulator transcription factor Regulator
  OG710_RS16930 (OG710_16955) - 3801008..3802261 (-) 1254 WP_330240086.1 histidine kinase -
  OG710_RS16935 (OG710_16960) - 3802371..3803303 (+) 933 WP_330240087.1 ATP-binding cassette domain-containing protein -
  OG710_RS16940 (OG710_16965) - 3803306..3804040 (+) 735 WP_330240088.1 ABC transporter permease -
  OG710_RS16945 (OG710_16970) - 3804057..3804458 (-) 402 WP_330240089.1 PPOX class F420-dependent oxidoreductase -
  OG710_RS16950 (OG710_16975) - 3804540..3805046 (+) 507 WP_330240090.1 GNAT family N-acetyltransferase -
  OG710_RS16955 (OG710_16980) - 3805050..3805676 (-) 627 WP_330240091.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23351.17 Da        Isoelectric Point: 7.2092

>NTDB_id=646674 OG710_RS16925 WP_330240085.1 3800298..3800960(-) (vraR) [Streptomyces sp. NBC_00525]
MPLSVLLVDDEPLVRAGLRAVLAAQPDIEVVGEAADGAAVIPLVRRLRPDVVVMDVRMPLMDGIEATRAVLRTMADPPKI
LVVTTFENDEYVYGALRAGAAGFLLKRARPAEIVHAVRLVAEGDSLLFPAAVRQLASSYGRAPGSAAARTALERAALTER
EREVLRLMARGLSNAEIAARLVVGAETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=646674 OG710_RS16925 WP_330240085.1 3800298..3800960(-) (vraR) [Streptomyces sp. NBC_00525]
ATGCCGCTGTCCGTGCTCCTGGTCGACGACGAACCGCTCGTACGGGCCGGGCTGCGCGCCGTGCTGGCGGCGCAGCCGGA
CATCGAGGTGGTGGGCGAGGCCGCGGACGGGGCCGCCGTGATCCCGCTGGTGCGGCGGCTGCGCCCCGATGTCGTCGTGA
TGGACGTGCGCATGCCGCTGATGGACGGCATCGAGGCCACGCGGGCGGTCCTGCGGACCATGGCGGACCCGCCGAAGATT
CTCGTGGTGACGACCTTCGAGAACGACGAGTACGTGTACGGGGCGCTGCGCGCGGGAGCGGCCGGTTTCCTGCTCAAGCG
GGCCCGCCCGGCCGAGATCGTGCACGCCGTACGGCTGGTGGCCGAGGGCGACTCCCTGCTGTTCCCGGCGGCGGTACGGC
AGTTGGCGTCGTCCTACGGCCGGGCCCCCGGCAGCGCAGCGGCCCGGACGGCCCTGGAGCGGGCCGCGCTGACCGAGCGC
GAGCGGGAGGTTCTGCGGCTGATGGCGCGCGGCCTGTCGAACGCGGAGATCGCCGCGCGCCTGGTGGTGGGAGCGGAGAC
GGTGAAGTCGCACGTCAGCGCCGTACTGGCGAAACTGGGCGCGCGGGACCGCACGCAGGCGGTCATCGCGGCGTACGAGT
CGGGCTTCGTGGCCCCGGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.639

99.545

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.368