Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG710_RS14845 Genome accession   NZ_CP107834
Coordinates   3379805..3380404 (+) Length   199 a.a.
NCBI ID   WP_018514171.1    Uniprot ID   A0ABY6PUE7
Organism   Streptomyces sp. NBC_00525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3374805..3385404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS14825 (OG710_14850) - 3376686..3377402 (+) 717 WP_330239757.1 GntR family transcriptional regulator -
  OG710_RS14830 (OG710_14855) - 3377510..3378160 (+) 651 WP_111329967.1 hypothetical protein -
  OG710_RS14835 (OG710_14860) - 3378188..3378985 (-) 798 WP_241989719.1 SLATT domain-containing protein -
  OG710_RS14840 (OG710_14865) - 3379366..3379704 (+) 339 WP_111335347.1 YbaB/EbfC family nucleoid-associated protein -
  OG710_RS14845 (OG710_14870) recR 3379805..3380404 (+) 600 WP_018514171.1 recombination mediator RecR Machinery gene
  OG710_RS14850 (OG710_14875) - 3380497..3381156 (+) 660 WP_111329969.1 DUF5063 domain-containing protein -
  OG710_RS14855 (OG710_14880) - 3381395..3382666 (+) 1272 WP_330239758.1 aspartate kinase -
  OG710_RS14860 (OG710_14885) - 3382663..3383727 (+) 1065 WP_330239759.1 aspartate-semialdehyde dehydrogenase -
  OG710_RS14865 (OG710_14890) - 3384110..3384685 (+) 576 WP_330239760.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21887.16 Da        Isoelectric Point: 5.1721

>NTDB_id=646664 OG710_RS14845 WP_018514171.1 3379805..3380404(+) (recR) [Streptomyces sp. NBC_00525]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEECGICRDQRRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646664 OG710_RS14845 WP_018514171.1 3379805..3380404(+) (recR) [Streptomyces sp. NBC_00525]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTCCAGGCGGAGCCCACGGACGTGCGGCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGCGCGGTCTGCGGCAATGTGGCCCAGCAGGAGGAGTGCGGCATCTGCCGCGACCAGCGGCGCGACCGTTCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGATGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGGCCGGACGATCTGCGCATCCGCGAGCTGCTGGCCCGCCTCGCGGACGGCT
CCATCACCGAGCTGATCCTGGCGACCGACCCCAATCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGCGTCACCCGGCTGGCGAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
CGGACGCGCCTTCGAGGGGAGGCGGCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447