Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG710_RS14770 Genome accession   NZ_CP107834
Coordinates   3363357..3364043 (+) Length   228 a.a.
NCBI ID   WP_330239749.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3358357..3369043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS14750 (OG710_14775) - 3358716..3359564 (+) 849 WP_330239745.1 tryptophan 2,3-dioxygenase family protein -
  OG710_RS14755 (OG710_14780) kynU 3359557..3360753 (+) 1197 WP_330239746.1 kynureninase -
  OG710_RS14760 (OG710_14785) - 3360935..3361810 (+) 876 WP_330239747.1 alpha/beta hydrolase -
  OG710_RS14765 (OG710_14790) - 3361963..3363360 (+) 1398 WP_330239748.1 histidine kinase -
  OG710_RS14770 (OG710_14795) vraR 3363357..3364043 (+) 687 WP_330239749.1 response regulator transcription factor Regulator
  OG710_RS14775 (OG710_14800) - 3364167..3365390 (+) 1224 WP_111329954.1 cytochrome P450 -
  OG710_RS14780 (OG710_14805) - 3365491..3367116 (-) 1626 WP_330239750.1 ABC transporter permease -
  OG710_RS14785 (OG710_14810) - 3367113..3368027 (-) 915 WP_330239751.1 ABC transporter ATP-binding protein -
  OG710_RS14790 (OG710_14815) - 3368126..3368680 (+) 555 WP_330239752.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24339.26 Da        Isoelectric Point: 4.8227

>NTDB_id=646663 OG710_RS14770 WP_330239749.1 3363357..3364043(+) (vraR) [Streptomyces sp. NBC_00525]
MTTTPPPPAAPIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVNGREAVAQAAVLRPDVVLMDIRMPELNGIEATREIV
AADEDAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSKLAAAPRPPALA
RVGDLTERETEVLVLIAQGLSNAEIAGHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 687 bp        

>NTDB_id=646663 OG710_RS14770 WP_330239749.1 3363357..3364043(+) (vraR) [Streptomyces sp. NBC_00525]
ATGACGACGACACCGCCGCCGCCCGCCGCGCCGATCCGGGTCCTCATCGTCGACGACCAGATGATGGTCCGCGAGGGCTT
CTCCGTCCTGCTCAACGCCATGCCGGGCATCGAGGTCGTCGGCGAGGCGGTGAACGGCCGCGAGGCCGTCGCCCAGGCCG
CCGTGCTCCGCCCCGACGTGGTCCTGATGGACATCCGGATGCCGGAGCTCAACGGAATCGAGGCGACCCGCGAGATCGTC
GCCGCCGACGAGGACGCGAAGGTCCTGGTCCTCACCACCTTCGACCTCGACGAGTACGTCTACCAGGCCCTGCGCGCGGG
CGCCTCCGGCTTCCTCCTCAAGGACGCATCGGCCCGCCAGCTCGCGGACGGCGTCCGCGTGGTCGCCGCCGGCGAGGCAC
TGCTCGCCCCCACCGTCACCCGGCGCCTGATCACCGAGTTCTCGAAGCTGGCCGCAGCCCCCCGCCCTCCGGCCCTGGCC
CGGGTCGGCGACCTGACCGAGCGCGAGACGGAAGTGCTCGTCCTCATCGCCCAGGGCCTGTCGAACGCGGAGATCGCCGG
GCACCTGGTCGTCGCCGAATCCACGATCAAGACCCATGTGAGCCGCATCCTGGTCAAACTCGGCCTGCGCGACCGCACCC
AGGCCGCCGTCTTCGCCTACGAAGCCCGCTTGGTCACCCCTTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-219)

Response regulator receiver domain (Response_reg)

(14-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

93.86

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

95.175

0.408