Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG710_RS07685 Genome accession   NZ_CP107834
Coordinates   1728092..1728775 (+) Length   227 a.a.
NCBI ID   WP_330238649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723092..1733775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS07665 (OG710_07680) - 1723770..1724426 (+) 657 WP_330238645.1 TetR family transcriptional regulator -
  OG710_RS07670 (OG710_07685) - 1724589..1725800 (+) 1212 WP_330238646.1 alpha/beta hydrolase -
  OG710_RS07675 (OG710_07690) - 1725889..1726845 (+) 957 WP_330238647.1 DUF4429 domain-containing protein -
  OG710_RS07680 (OG710_07695) - 1726860..1728095 (+) 1236 WP_330238648.1 sensor histidine kinase -
  OG710_RS07685 (OG710_07700) vraR 1728092..1728775 (+) 684 WP_330238649.1 response regulator transcription factor Regulator
  OG710_RS07690 (OG710_07705) - 1728952..1730118 (+) 1167 WP_330238650.1 alpha/beta hydrolase -
  OG710_RS07695 (OG710_07710) - 1730079..1731119 (-) 1041 WP_330238651.1 aldo/keto reductase -
  OG710_RS07700 (OG710_07715) - 1731119..1731580 (-) 462 WP_330238652.1 MerR family transcriptional regulator -
  OG710_RS07705 (OG710_07720) - 1731674..1732489 (+) 816 WP_330238653.1 serine hydrolase domain-containing protein -
  OG710_RS07710 (OG710_07725) - 1732533..1733114 (+) 582 WP_330238654.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24119.95 Da        Isoelectric Point: 5.3435

>NTDB_id=646648 OG710_RS07685 WP_330238649.1 1728092..1728775(+) (vraR) [Streptomyces sp. NBC_00525]
MTIRVIVVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVEVSRRVHPDVVLMDVRMPEMDGLAAARELLDPPPGVIHV
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARQQPSPAARNGAALRLN
GLTPRETEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLSLRDRAQAVIFAYEAGLVVPGGA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=646648 OG710_RS07685 WP_330238649.1 1728092..1728775(+) (vraR) [Streptomyces sp. NBC_00525]
GTGACCATCCGTGTGATCGTCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCCCTGCTGTCGGCGCAGGCGGA
CATCGACGTGGTCGGGGAGGCGCCGGACGGGCGCCAGGGGGTCGAGGTCAGCCGCCGGGTGCATCCGGACGTGGTCCTGA
TGGACGTCCGGATGCCCGAGATGGACGGCCTCGCGGCGGCCCGCGAGCTGCTGGACCCGCCGCCGGGCGTGATCCATGTG
CCGCGCGTGCTGATGCTGACCACGTTCGACGTGGACGACTACGTGTACGAGGCGCTGCGCGCCGGGGCGTCGGGCTTCCT
GCTGAAGGACGCGCCCCCGGCGGATCTGATCGCGGCGGTACGGGTGGTGGCGGCGGGCGACGCACTGCTCGCGCCGTCCG
TGACGCGCCGTCTGATCGCGGACTTCGCCCGGCAGCAGCCGTCACCGGCCGCCCGCAACGGCGCCGCGCTGCGGCTCAAC
GGACTGACCCCGCGTGAGACGGAGGTCCTGGAGCTGATCGCGCGCGGTCTGTCGAACCAGGAGATCGCGGGGCGGCTGGT
GCTCGCCGAACAGACCGTCAAAACGCACATCGGGCGGGTCCTGGCGAAGCTGTCCCTGCGGGACCGGGCGCAGGCGGTGA
TCTTCGCGTACGAGGCGGGGCTCGTCGTCCCCGGCGGCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-216)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.556

99.119

0.392
  degU Bacillus subtilis subsp. subtilis str. 168

36.564

100

0.366