Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG710_RS04955 Genome accession   NZ_CP107834
Coordinates   1128456..1129100 (-) Length   214 a.a.
NCBI ID   WP_111333278.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1123456..1134100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS04930 (OG710_04935) - 1124244..1125173 (-) 930 WP_111333286.1 SPFH domain-containing protein -
  OG710_RS04935 (OG710_04940) - 1125248..1125679 (-) 432 WP_330238239.1 NfeD family protein -
  OG710_RS04940 (OG710_04945) - 1125753..1126550 (-) 798 WP_330238240.1 ABC transporter ATP-binding protein -
  OG710_RS04945 (OG710_04950) - 1126748..1127577 (+) 830 WP_330242113.1 IS5 family transposase -
  OG710_RS04950 (OG710_04955) - 1127606..1128385 (+) 780 WP_111333280.1 hypothetical protein -
  OG710_RS04955 (OG710_04960) vraR 1128456..1129100 (-) 645 WP_111333278.1 response regulator transcription factor Regulator
  OG710_RS04960 (OG710_04965) - 1129093..1130238 (-) 1146 WP_330238241.1 GAF domain-containing sensor histidine kinase -
  OG710_RS04965 (OG710_04970) - 1130662..1131477 (+) 816 WP_330238242.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23021.39 Da        Isoelectric Point: 6.0289

>NTDB_id=646642 OG710_RS04955 WP_111333278.1 1128456..1129100(-) (vraR) [Streptomyces sp. NBC_00525]
MADRIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVAAIEKLRPDVVLMDIKMPGTDGIEALRRLRELANPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDEPGTGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=646642 OG710_RS04955 WP_111333278.1 1128456..1129100(-) (vraR) [Streptomyces sp. NBC_00525]
GTGGCTGACAGGATCATCAGGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGCGGCCTGCGTACGTTCCTGGAGAT
CCAGGACGACATCGAAGTGGTCGGCGAGGCGTCCGACGGCGCCGAGGGCGTGGCCGCCATCGAGAAGCTGCGGCCCGACG
TCGTACTGATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCAGACTCCGCGAGCTGGCGAACCCGGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTCGTCCCCGCCCTGCGCGCGGGCGCCTCCGGCTATGTGTA
CAAGGACGTCGACCCGGACGCCCTGGCCGGGGCCATCCGCTCCGTCCACGCCGGACACGTCCTGCTCCAGCCCGAGGTCG
CCGGGGCACTCCTCGCCCAGGACGAGCCCGGCACCGGCACCGGCCGGGGCAGCACCCTCACCGAACGCGAGCGGGAAGTG
CTCGGCCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCACGCGCCCTGGTCCTGTCCGAGAAGACGGTCAAGACCCA
CGTCTCCAACATCCTGATGAAGCTCGACCTCTCCGACCGCACCCAGGCCGCCCTCTGGGCGGTCCGCCACGGAGCGGCAG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.175

96.262

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407