Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS33_RS34460 Genome accession   NZ_CP107819
Coordinates   8037306..8037962 (+) Length   218 a.a.
NCBI ID   WP_330334350.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8032306..8042962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS34450 (OHS33_34445) - 8034776..8035951 (-) 1176 WP_330334348.1 alpha/beta hydrolase -
  OHS33_RS34455 (OHS33_34450) - 8036086..8037309 (+) 1224 WP_330334349.1 sensor histidine kinase -
  OHS33_RS34460 (OHS33_34455) vraR 8037306..8037962 (+) 657 WP_330334350.1 response regulator transcription factor Regulator
  OHS33_RS34465 (OHS33_34460) - 8038920..8039618 (-) 699 WP_330334351.1 alpha/beta hydrolase -
  OHS33_RS34470 (OHS33_34465) - 8039768..8040355 (-) 588 Protein_6800 class I SAM-dependent methyltransferase -
  OHS33_RS34475 (OHS33_34470) - 8040416..8041894 (-) 1479 WP_330334352.1 ATP-binding protein -
  OHS33_RS34480 (OHS33_34475) - 8041887..8042564 (-) 678 WP_330334353.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23100.84 Da        Isoelectric Point: 4.7704

>NTDB_id=646633 OHS33_RS34460 WP_330334350.1 8037306..8037962(+) (vraR) [Streptomyces sp. NBC_00536]
MTIRVVLADDQELIRAGLSMVITDIPDIEIVGEAGTGARAVELAAELRPDVVVMDIRMPVMDGIEATLAITHTATPPRVL
MLTTFDDDENVYASLRAGASGFLVKDMALVDIVAAIRVVAGGDALIAPSVTSRLIADITSRPNPSPPRREITGLTQREHE
VLVLVGSGMSNGEIAAHLFIGLATAKTHVARLLTKLDARDRVQLVIAAYEAGLVPPRG

Nucleotide


Download         Length: 657 bp        

>NTDB_id=646633 OHS33_RS34460 WP_330334350.1 8037306..8037962(+) (vraR) [Streptomyces sp. NBC_00536]
ATGACGATCCGCGTCGTGCTCGCCGACGATCAGGAGCTGATACGTGCCGGGCTGAGCATGGTCATCACCGACATCCCCGA
CATCGAGATCGTAGGCGAGGCCGGAACGGGTGCGCGGGCCGTTGAGCTGGCCGCGGAGCTGCGGCCCGACGTCGTGGTGA
TGGACATCCGCATGCCCGTCATGGACGGCATCGAAGCCACCCTGGCGATCACCCACACGGCCACACCGCCGCGCGTACTC
ATGCTCACCACGTTCGACGACGACGAGAACGTCTACGCCTCGCTGCGGGCCGGCGCGAGCGGATTCCTGGTCAAGGACAT
GGCGCTGGTGGACATCGTCGCGGCGATCCGCGTGGTGGCCGGCGGCGACGCGTTGATCGCGCCGAGCGTCACCAGCCGCC
TCATCGCCGACATCACCAGCCGGCCCAACCCCTCCCCGCCGAGGAGGGAGATCACCGGCCTCACCCAACGTGAACACGAG
GTACTGGTCCTGGTCGGGAGCGGCATGTCCAACGGCGAGATCGCCGCCCACCTTTTCATCGGCCTCGCCACCGCGAAGAC
CCACGTGGCCCGCCTGCTGACCAAACTCGACGCCCGCGACCGCGTCCAACTCGTCATCGCGGCTTACGAGGCGGGGCTGG
TTCCGCCGAGGGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.352

99.083

0.39
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.362