Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LZT96_RS08640 Genome accession   NZ_CP090941
Coordinates   1834977..1835552 (-) Length   191 a.a.
NCBI ID   WP_002498624.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain HAF242     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829977..1840552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZT96_RS08610 (LZT96_08610) - 1830997..1831554 (-) 558 WP_001831688.1 GNAT family N-acetyltransferase -
  LZT96_RS08615 (LZT96_08615) - 1831784..1831999 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  LZT96_RS12520 - 1832102..1832218 (+) 117 WP_353954719.1 SAR1012 family small protein -
  LZT96_RS08620 (LZT96_08620) - 1832474..1833208 (+) 735 WP_002498628.1 halocin C8 precursor-like protein -
  LZT96_RS08625 (LZT96_08625) - 1833590..1833733 (-) 144 WP_154619137.1 hypothetical protein -
  LZT96_RS08640 (LZT96_08640) comK/comK1 1834977..1835552 (-) 576 WP_002498624.1 competence protein ComK Regulator
  LZT96_RS08645 (LZT96_08645) - 1835767..1835985 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  LZT96_RS08650 (LZT96_08650) - 1836063..1837049 (-) 987 WP_002498623.1 lipoate--protein ligase -
  LZT96_RS08655 (LZT96_08655) - 1837254..1837439 (+) 186 WP_001829339.1 DUF2187 family protein -
  LZT96_RS08660 (LZT96_08660) - 1837445..1838047 (+) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  LZT96_RS08665 (LZT96_08665) - 1838151..1839656 (-) 1506 WP_002476551.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22683.78 Da        Isoelectric Point: 9.2887

>NTDB_id=646591 LZT96_RS08640 WP_002498624.1 1834977..1835552(-) (comK/comK1) [Staphylococcus epidermidis strain HAF242]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTSKVSPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=646591 LZT96_RS08640 WP_002498624.1 1834977..1835552(-) (comK/comK1) [Staphylococcus epidermidis strain HAF242]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAAATTATCAGATTTGATCAAACTAGCAAAGTAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTCTAAATATTTTCGAGGCGCTTTCACGTTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.216

96.859

0.738
  comK/comK1 Staphylococcus aureus N315

76.216

96.859

0.738