Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS33_RS16950 Genome accession   NZ_CP107819
Coordinates   3899690..3900289 (-) Length   199 a.a.
NCBI ID   WP_330331244.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3894690..3905289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS16930 (OHS33_16925) - 3895635..3896285 (-) 651 WP_330335083.1 SigE family RNA polymerase sigma factor -
  OHS33_RS16935 (OHS33_16930) - 3896522..3897595 (-) 1074 WP_330331241.1 aspartate-semialdehyde dehydrogenase -
  OHS33_RS16940 (OHS33_16935) - 3897592..3898866 (-) 1275 WP_330331242.1 aspartate kinase -
  OHS33_RS16945 (OHS33_16940) - 3899041..3899697 (-) 657 WP_330331243.1 DUF5063 domain-containing protein -
  OHS33_RS16950 (OHS33_16945) recR 3899690..3900289 (-) 600 WP_330331244.1 recombination mediator RecR Machinery gene
  OHS33_RS16955 (OHS33_16950) - 3900351..3900695 (-) 345 WP_330331245.1 YbaB/EbfC family nucleoid-associated protein -
  OHS33_RS16960 (OHS33_16955) - 3900951..3901700 (+) 750 WP_330331246.1 SLATT domain-containing protein -
  OHS33_RS16965 (OHS33_16960) - 3901748..3902398 (-) 651 WP_330331247.1 hypothetical protein -
  OHS33_RS16970 (OHS33_16965) - 3902514..3904964 (-) 2451 WP_330331248.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21803.12 Da        Isoelectric Point: 4.9976

>NTDB_id=646587 OHS33_RS16950 WP_330331244.1 3899690..3900289(-) (recR) [Streptomyces sp. NBC_00536]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLSIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646587 OHS33_RS16950 WP_330331244.1 3899690..3900289(-) (recR) [Streptomyces sp. NBC_00536]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGGGACCTGACCGTG
ATCTGTGTGGTCGAGGAGTCGAAGGACGTCGTCGCGATCGAGCGGACGCGTGAGTTCCGGGGCCGGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGACCGGACGACCTGAGCATCCGCGAGCTGCTGGCGCGCCTCGCGGACGGGG
CGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACGGCGACGTACCTCGCCCGGATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGACTTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472