Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHS33_RS16255 Genome accession   NZ_CP107819
Coordinates   3747074..3748483 (+) Length   469 a.a.
NCBI ID   WP_330331122.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3742074..3753483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS16240 (OHS33_16235) - 3743299..3744228 (-) 930 WP_330331119.1 Ppx/GppA phosphatase family protein -
  OHS33_RS16245 (OHS33_16240) - 3744291..3745139 (+) 849 WP_330331120.1 hypothetical protein -
  OHS33_RS16250 (OHS33_16245) - 3745144..3746916 (-) 1773 WP_330331121.1 hypothetical protein -
  OHS33_RS16255 (OHS33_16250) radA 3747074..3748483 (+) 1410 WP_330331122.1 DNA repair protein RadA Machinery gene
  OHS33_RS16260 (OHS33_16255) disA 3748661..3749785 (+) 1125 WP_330331123.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHS33_RS16265 (OHS33_16260) - 3749991..3750800 (-) 810 WP_330331124.1 hypothetical protein -
  OHS33_RS16270 (OHS33_16265) - 3750981..3751592 (+) 612 WP_330331125.1 phosphatase PAP2 family protein -
  OHS33_RS16275 (OHS33_16270) - 3751615..3752574 (+) 960 WP_330331126.1 A/G-specific adenine glycosylase -
  OHS33_RS16280 (OHS33_16275) - 3752771..3753331 (+) 561 WP_330331127.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49119.28 Da        Isoelectric Point: 8.2591

>NTDB_id=646582 OHS33_RS16255 WP_330331122.1 3747074..3748483(+) (radA) [Streptomyces sp. NBC_00536]
MAAARTSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEETGAPAVRTTAAGRVSTAAVPIGQVDGRQATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIRALSDHLYLAAETDLS
AVLGHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPVDPGKVPAGMKVIEVADMGDALRVLPRGRSRTPAKSEG

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=646582 OHS33_RS16255 WP_330331122.1 3747074..3748483(+) (radA) [Streptomyces sp. NBC_00536]
ATGGCAGCAGCCCGTACATCCCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGAGTGCGGCTGGACCACCGC
GAAGTGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGACGGGCGCGCCCGCCGTACGGACCACCG
CGGCCGGCCGCGTGTCCACCGCCGCCGTACCCATCGGCCAGGTCGACGGGCGCCAGGCGACGGCCCGCTCCACCGGCGTC
GACGAACTGGACCGGGTGCTCGGCGGCGGTCTCGTCCCCGGAGCGGTGGTGCTGCTCGCCGGGGAGCCCGGCGTCGGCAA
GTCCACCCTCCTCCTGGACGTCGCGGCGAAGGCCGCGAGCGACGAGCACCGCACCCTGTACGTGACGGGCGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGCGCCGACCGGATCCGCGCGCTCAGCGACCACCTCTACCTCGCGGCCGAGACCGACCTGTCG
GCGGTGCTCGGACACCTCGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCCGTACAGACCATCGCCTCCCCCGAGAT
CGACGGGGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGT
CCACGCTGCTCGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGTCCGCGGCTGCTGGAGCACCTCGTCGACGTGGTG
CTCAGCTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTCCGCGGCATCAAGAACCGGTACGGCGCCACCGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCGGAGG
CGGTCCCCGGCACCTGCCTGACGGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGAC
TCGCAGATCCCCTCGCCCCGGCGGACCACCTCCGGGCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTGCTGGAGCA
GCGCGGCCGGATCACCGCGCTCGGCAAGCGGGACATCTACACCGCGACCGTCGGCGGGGTGAAGCTGACGGAGCCGGCCG
CCGACCTGGCCGTGGCGCTGGCGCTGGCCTCGGCCGCCAGCGACGTACCGCTGCCGAAGAACCTCGTCGCGATCGGGGAG
GTCGGGCTGGCCGGTGAGGTGCGGCGGGTGACGGGCGTACAGCGCAGGCTCGCCGAGGCGCACCGGCTCGGTTTCACGCA
CGCCCTGGTGCCGGTCGACCCGGGCAAGGTGCCCGCCGGGATGAAGGTCATCGAGGTGGCCGACATGGGGGACGCGCTGC
GGGTGCTGCCGCGCGGCCGGAGCCGGACCCCGGCCAAGAGCGAGGGCTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(85-225)

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.077

97.015

0.418
  radA Streptococcus mitis NCTC 12261

43.077

97.015

0.418
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae Rx1

43.142

96.375

0.416
  radA Streptococcus pneumoniae TIGR4

43.142

96.375

0.416
  radA Streptococcus pneumoniae D39

43.142

96.375

0.416
  radA Streptococcus pneumoniae R6

43.142

96.375

0.416