Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZT96_RS03635 Genome accession   NZ_CP090941
Coordinates   801589..801984 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain HAF242     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 796589..806984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZT96_RS03610 (LZT96_03610) - 798008..798412 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  LZT96_RS03615 (LZT96_03615) - 798561..798794 (+) 234 WP_002456242.1 DUF1146 family protein -
  LZT96_RS03620 (LZT96_03620) murA 798904..800169 (+) 1266 WP_254582826.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LZT96_RS03625 (LZT96_03625) fabZ 800203..800640 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LZT96_RS03630 (LZT96_03630) - 800958..801398 (-) 441 WP_001829935.1 YwpF-like family protein -
  LZT96_RS03635 (LZT96_03635) ssb 801589..801984 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  LZT96_RS03640 (LZT96_03640) - 802371..803030 (+) 660 WP_002474611.1 transglycosylase family protein -
  LZT96_RS03645 (LZT96_03645) tenA 803315..804004 (+) 690 WP_060556107.1 thiaminase II -
  LZT96_RS03650 (LZT96_03650) thiD 803997..804818 (+) 822 WP_002498782.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LZT96_RS03655 (LZT96_03655) thiM 804811..805599 (+) 789 WP_002498781.1 hydroxyethylthiazole kinase -
  LZT96_RS03660 (LZT96_03660) thiE 805605..806243 (+) 639 WP_032603839.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=646571 LZT96_RS03635 WP_002457121.1 801589..801984(+) (ssb) [Staphylococcus epidermidis strain HAF242]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=646571 LZT96_RS03635 WP_002457121.1 801589..801984(+) (ssb) [Staphylococcus epidermidis strain HAF242]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGTCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733