Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHS33_RS11350 Genome accession   NZ_CP107819
Coordinates   2610375..2612108 (+) Length   577 a.a.
NCBI ID   WP_330330265.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2605375..2617108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS11310 (OHS33_11305) - 2605389..2605652 (+) 264 WP_330330261.1 hypothetical protein -
  OHS33_RS11315 (OHS33_11310) - 2606015..2606647 (-) 633 WP_330330262.1 hypothetical protein -
  OHS33_RS11320 (OHS33_11315) - 2606858..2607350 (-) 493 Protein_2245 pyridine nucleotide-disulfide oxidoreductase -
  OHS33_RS11340 (OHS33_11335) - 2608336..2608635 (+) 300 WP_330330263.1 YtxH domain-containing protein -
  OHS33_RS11345 (OHS33_11340) - 2608718..2610190 (+) 1473 WP_330330264.1 FGGY family carbohydrate kinase -
  OHS33_RS11350 (OHS33_11345) rcrP 2610375..2612108 (+) 1734 WP_330330265.1 ABC transporter ATP-binding protein Regulator
  OHS33_RS11355 (OHS33_11350) rcrQ 2612105..2614036 (+) 1932 WP_330330266.1 ABC transporter ATP-binding protein Regulator
  OHS33_RS11360 (OHS33_11355) - 2614134..2615231 (-) 1098 WP_330335009.1 RNA polymerase sigma factor -
  OHS33_RS11365 (OHS33_11360) - 2615370..2615987 (+) 618 WP_330330267.1 hypothetical protein -
  OHS33_RS11370 (OHS33_11365) - 2615984..2617036 (+) 1053 WP_330330268.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62420.37 Da        Isoelectric Point: 5.2656

>NTDB_id=646571 OHS33_RS11350 WP_330330265.1 2610375..2612108(+) (rcrP) [Streptomyces sp. NBC_00536]
MLIRLLRTHLGPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILSFGALMLGVSLVQLVCNVGAVYFGA
RTAAAVGRDIRGAVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMSFTLMVSAPIMCVGGIAMALSLDVKLSGV
LAAVVPVLGVAVGAIVWKTRPLFRLMQTRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRQANADLTAVSLASGKLLAL
MFPTVILVVNISSVAVIWFGAMRIDGNGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTETSVTP
PTDPVRELARHGQLELRGADFRYPGAEASVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPALLAKTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWQALEVAQAKEFVSELEGGLEAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGRVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=646571 OHS33_RS11350 WP_330330265.1 2610375..2612108(+) (rcrP) [Streptomyces sp. NBC_00536]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTCCGTACCGGAAACCCATCGCCCTGTTGGTGCTGCTGCAGCTGCTGCA
GACCAGCGCGAGCCTGTACCTGCCCACGCTCAACGCGGACATCATCGACAACGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGTCCTTCGGCGCCCTGATGCTCGGCGTGTCCCTCGTGCAGCTGGTGTGCAACGTCGGCGCCGTCTACTTCGGCGCC
CGGACGGCGGCCGCGGTCGGCCGTGACATCCGCGGCGCGGTGTTCGACCGGGTCCAGAGCTTCTCCGCCCGGGAGCTGGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGCGATGGCCCTGTCCCTCGACGTGAAGCTGTCGGGCGTG
CTGGCGGCGGTGGTGCCGGTGCTCGGCGTCGCGGTCGGGGCGATCGTCTGGAAGACGCGTCCGCTGTTCCGCCTGATGCA
GACGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGGCAGGCCAACGCCGACCTGACCGCGGTCTCCCTCGCCTCCGGCAAGCTGCTGGCGCTG
ATGTTCCCGACGGTCATCCTCGTCGTGAACATCTCCAGCGTCGCCGTGATCTGGTTCGGCGCGATGCGCATCGACGGCAA
CGGGATGGAGATCGGCCAGCTGACCGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCGGAGCGCGTCCAGGAGGTCCTGGACACCGAGACCAGCGTGACGCCG
CCCACCGATCCGGTGCGCGAGCTGGCCCGGCACGGGCAGCTGGAGCTGCGCGGGGCCGACTTCCGCTACCCGGGCGCCGA
GGCGTCCGTGCTGCGCGGGGTGGACCTGGTGGCGCGGCCGGGCGAGACGACCGCCGTGATCGGGTCGACGGGCAGCGGCA
AGTCCACGCTGCTGGGGCTCGTACCGCGACTGTTCGACGCGACGGGCGGCGAGGTGCTGGTCGACGGCGAGGACGTACGG
CGCCTCGATCCGGCGCTGCTGGCCAAGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTGTTCTCCGGAACCGTCGCCTC
CAACCTGCGCTACGGACGCCCCGACGCGACCGACGAGGAACTGTGGCAGGCCCTGGAAGTGGCCCAGGCCAAGGAGTTCG
TGTCCGAGCTGGAGGGCGGCCTGGAGGCCCCCATCGCCCAGGGCGGAACGAACGTCTCCGGCGGCCAGCGCCAGCGCCTC
GCGATCGCCCGCACGCTGGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCAGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTGTCCACGATCC
GCGACGCGGACCGGATCATCGTGCTGGACGAGGGGCGGGTGGTGGGCGAGGGACGCCACCACGAACTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.519

100

0.399