Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7X62_RS17125 Genome accession   NZ_AP021935
Coordinates   3658419..3659156 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WP2-W18-ESBL-10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653419..3664156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X62_RS17110 (WP2W18E10_33180) clpC 3653873..3656446 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  H7X62_RS17115 (WP2W18E10_33190) yfiH 3656576..3657307 (-) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  H7X62_RS17120 (WP2W18E10_33200) rluD 3657304..3658284 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7X62_RS17125 (WP2W18E10_33210) comL 3658419..3659156 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7X62_RS17130 (WP2W18E10_33220) raiA 3659427..3659768 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7X62_RS17135 pheL 3659872..3659919 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7X62_RS17140 (WP2W18E10_33230) pheA 3660018..3661178 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7X62_RS17145 (WP2W18E10_33240) tyrA 3661221..3662342 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7X62_RS17150 (WP2W18E10_33250) aroF 3662353..3663423 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7X62_RS17155 (WP2W18E10_33260) yfiL 3663632..3663997 (+) 366 WP_019842457.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=64655 H7X62_RS17125 WP_000197686.1 3658419..3659156(+) (comL) [Escherichia coli strain WP2-W18-ESBL-10]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=64655 H7X62_RS17125 WP_000197686.1 3658419..3659156(+) (comL) [Escherichia coli strain WP2-W18-ESBL-10]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment