Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS24110 Genome accession   NZ_CP107811
Coordinates   5372258..5372905 (+) Length   215 a.a.
NCBI ID   WP_329194126.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5367258..5377905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS24100 (OG861_24105) - 5369891..5370562 (-) 672 WP_329194130.1 transglycosylase SLT domain-containing protein -
  OG861_RS24105 (OG861_24110) - 5371114..5372265 (+) 1152 WP_329194128.1 GAF domain-containing sensor histidine kinase -
  OG861_RS24110 (OG861_24115) vraR 5372258..5372905 (+) 648 WP_329194126.1 response regulator transcription factor Regulator
  OG861_RS24115 (OG861_24120) - 5373023..5373268 (+) 246 WP_329194124.1 chaplin -
  OG861_RS24120 (OG861_24125) - 5373544..5374320 (-) 777 WP_329194122.1 hypothetical protein -
  OG861_RS24125 (OG861_24130) - 5374455..5375249 (+) 795 WP_329194120.1 ABC transporter ATP-binding protein -
  OG861_RS24130 (OG861_24135) - 5375304..5375735 (+) 432 WP_329194118.1 NfeD family protein -
  OG861_RS24135 (OG861_24140) - 5375820..5376797 (+) 978 WP_329194115.1 SPFH domain-containing protein -
  OG861_RS24140 (OG861_24145) - 5376887..5377657 (+) 771 WP_329194112.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23427.79 Da        Isoelectric Point: 5.1748

>NTDB_id=646548 OG861_RS24110 WP_329194126.1 5372258..5372905(+) (vraR) [Streptomyces sp. NBC_00539]
MADTPIRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEAADGEEGIARAGELRPDVILMDVKMPGTDGIEALRRLRELENPA
RVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVARALLAQEDQPSSSPRAGALTDREREV
LSLIADGRANREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGIVEA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=646548 OG861_RS24110 WP_329194126.1 5372258..5372905(+) (vraR) [Streptomyces sp. NBC_00539]
GTGGCTGACACACCCATCCGCGTCCTGCTGGTCGACGACCACCAGGTGGTCCGGCGCGGCCTGCGCACCTTCCTGGAAGT
ACAGGAGGACATCGAGGTCGTCGGCGAGGCCGCGGACGGCGAGGAGGGCATCGCCCGCGCCGGGGAACTGCGCCCCGACG
TGATCCTCATGGACGTCAAGATGCCCGGTACCGACGGCATCGAGGCACTGCGGCGGCTGCGCGAACTGGAGAACCCGGCG
CGGGTCCTGGTCGTCACCAGCTTCACCGAACAGCGGACGGTGGTCCCCGCCCTGCGGGCCGGGGCCGCCGGATACGTCTA
CAAGGACATCGACCCCGACGCCCTGGCGGGAGCCATCCGCTCGGTCCACGCGGGCCACGTCCTGCTCCAGCCGGAGGTGG
CCCGCGCCCTGCTCGCCCAGGAGGACCAGCCGTCGTCCTCACCGCGCGCGGGCGCGCTGACCGACCGGGAACGCGAGGTC
CTCTCCCTCATCGCGGACGGCCGGGCAAACCGGGAGATCGCCCGGGCGCTGGTCCTGTCCGAGAAGACGGTCAAGACGCA
CGTCTCGAACATCCTGATGAAACTGGACCTCTCCGACCGCACGCAGGCCGCCCTGTGGGCGGTCCGCCACGGCATCGTGG
AGGCTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.498

97.209

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395