Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG861_RS17840 Genome accession   NZ_CP107811
Coordinates   3961401..3962813 (-) Length   470 a.a.
NCBI ID   WP_329196131.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3956401..3967813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS17815 (OG861_17820) - 3956538..3957179 (-) 642 WP_329202286.1 hypothetical protein -
  OG861_RS17820 (OG861_17825) - 3957224..3957784 (-) 561 WP_329196137.1 SigE family RNA polymerase sigma factor -
  OG861_RS17825 (OG861_17830) - 3958072..3958977 (-) 906 WP_329196136.1 A/G-specific adenine glycosylase -
  OG861_RS17830 (OG861_17835) - 3959310..3960041 (+) 732 WP_329196135.1 hypothetical protein -
  OG861_RS17835 (OG861_17840) disA 3960060..3961184 (-) 1125 WP_329196133.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG861_RS17840 (OG861_17845) radA/sms 3961401..3962813 (-) 1413 WP_329196131.1 DNA repair protein RadA Machinery gene
  OG861_RS17845 (OG861_17850) - 3963021..3964769 (+) 1749 WP_329196129.1 hypothetical protein -
  OG861_RS17850 (OG861_17855) - 3964831..3965628 (-) 798 WP_329196127.1 hypothetical protein -
  OG861_RS17855 (OG861_17860) - 3965716..3966645 (+) 930 WP_329196126.1 Ppx/GppA phosphatase family protein -
  OG861_RS17860 (OG861_17865) - 3966926..3967759 (+) 834 WP_329196124.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49283.51 Da        Isoelectric Point: 8.0046

>NTDB_id=646532 OG861_RS17840 WP_329196131.1 3961401..3962813(-) (radA/sms) [Streptomyces sp. NBC_00539]
MAARTSRSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSAPAVPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDDHRTLYVTGEESASQVRLRADRINALNDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGIIGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRARTPARERAGE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=646532 OG861_RS17840 WP_329196131.1 3961401..3962813(-) (radA/sms) [Streptomyces sp. NBC_00539]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTGGACGACCGCGAA
ATGGCTCGGCCGGTGCCCCGAGTGCCAGGCGTGGGGGACCGTCGAGGAGATGGGTGCGCCCGCCGTGCGGACCACCGCGG
CCGGCCGGGTCTCGGCCCCCGCCGTCCCGATCGCCCAGGTCGACGGCCGTACGGCGACGGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGGGTCCTCGGCGGCGGCCTCGTGCCGGGGGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTC
GACGCTGCTGCTGGACGTCGCCGCGAAGGCGGCCACCGACGACCACCGCACCCTGTACGTGACGGGCGAGGAGTCCGCGA
GCCAGGTCCGGCTGCGGGCCGACCGGATCAACGCGCTGAACGACCACCTCTACCTCGCGGCGGAGACGGACCTCTCCGCC
GTCCTCGGACACCTGGACGCGGTCAAGCCCTCGCTGCTGATCCTGGACTCCGTACAGACCATCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCACAGGTGCGCGAGGTGGCCGGGGCACTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGA
CCCTGCTCGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGCCCCCGGCTGCTGGAACACCTCGTGGACGTGGTGCTC
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGGCTGGTGCGCGGTGTGAAGAACCGTTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGCATCATCGGTCTCGCCGACCCGAGCGGGCTGTTCCTCACGCGCCGCGCGGAGGCCG
TGCCGGGCACCTGCCTGACGGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTGGACTCG
CAGATCCCCTCGCCGCGCCGGACCACCTCGGGGCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAACG
CGGCCGGATCACGGCCCTGGGCAAGCGGGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTCACGGAGCCGGCCGCGG
ACCTGGCGATCGCGCTGGCGCTGGCCTCGGCGGCGAGCGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGGGAGGTC
GGGCTGGCGGGCGAGGTGCGGCGGGTGACCGGCGTCCAGCGACGGCTCGCGGAAGCCCACCGGCTCGGGTTCACGCACGC
GCTGGTCCCGGCAGATCCGGGGAAGGTGCCGGCGGGCATGAAGGTGATCGAGGTGGCGGACATGGGCGACGCGCTACGGG
TCTTGCCGCGCGGCCGGGCCCGCACGCCTGCCCGGGAGCGGGCGGGCGAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.053

96.596

0.426
  radA Streptococcus mitis SK321

42.511

96.596

0.411
  radA Streptococcus mitis NCTC 12261

42.511

96.596

0.411
  radA Streptococcus pneumoniae TIGR4

42.572

95.957

0.409
  radA Streptococcus pneumoniae R6

42.572

95.957

0.409
  radA Streptococcus pneumoniae Rx1

42.572

95.957

0.409
  radA Streptococcus pneumoniae D39

42.572

95.957

0.409