Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1L23_RS15525 Genome accession   NZ_CP090930
Coordinates   3120790..3121395 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Agona strain R21.2430     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115790..3126395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1L23_RS15510 (L1L23_15510) helD 3116007..3118061 (-) 2055 WP_000420499.1 DNA helicase IV -
  L1L23_RS15515 (L1L23_15515) - 3118185..3118631 (+) 447 WP_001261222.1 YccF domain-containing protein -
  L1L23_RS15520 (L1L23_15520) yccS 3118650..3120803 (+) 2154 WP_000950862.1 YccS family putative transporter -
  L1L23_RS15525 (L1L23_15525) sxy/tfoX 3120790..3121395 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  L1L23_RS15530 (L1L23_15530) sulA 3121612..3122121 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  L1L23_RS15535 (L1L23_15535) ompA 3122478..3123536 (+) 1059 WP_001747676.1 porin OmpA -
  L1L23_RS15540 (L1L23_15540) matP 3123608..3124060 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  L1L23_RS15545 (L1L23_15545) - 3124246..3126006 (+) 1761 WP_000156447.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=646531 L1L23_RS15525 WP_001202375.1 3120790..3121395(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Agona strain R21.2430]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=646531 L1L23_RS15525 WP_001202375.1 3120790..3121395(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Agona strain R21.2430]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751