Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   SPYOHK_RS10300 Genome accession   NZ_AFRY01000001
Coordinates   54042..54137 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49042..59137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS08935 (SPYOHK_00155) - 49912..51252 (+) 1341 WP_002987721.1 hypothetical protein -
  SPYOHK_RS08930 (SPYOHK_00160) purB 51621..52913 (+) 1293 WP_002987723.1 adenylosuccinate lyase -
  SPYOHK_RS08925 (SPYOHK_00165) comR 53047..53958 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  SPYOHK_RS10300 comS 54042..54137 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  SPYOHK_RS08920 (SPYOHK_00170) ruvB 54184..55182 (+) 999 WP_002987726.1 Holliday junction branch migration DNA helicase RuvB -
  SPYOHK_RS08915 (SPYOHK_00175) - 55320..55757 (+) 438 WP_002987727.1 low molecular weight protein-tyrosine-phosphatase -
  SPYOHK_RS08910 (SPYOHK_00180) - 55781..56182 (+) 402 WP_002987730.1 MORN repeat-containing protein -
  SPYOHK_RS08905 (SPYOHK_00185) - 56179..57954 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=64653 SPYOHK_RS10300 WP_198462994.1 54042..54137(+) (comS) [Streptococcus pyogenes HKU QMH11M0907901]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=64653 SPYOHK_RS10300 WP_198462994.1 54042..54137(+) (comS) [Streptococcus pyogenes HKU QMH11M0907901]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment