Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG861_RS16905 Genome accession   NZ_CP107811
Coordinates   3770618..3771217 (+) Length   199 a.a.
NCBI ID   WP_329196361.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3765618..3776217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS16880 (OG861_16890) - 3766094..3767446 (+) 1353 WP_329196371.1 aspartate aminotransferase family protein -
  OG861_RS16885 (OG861_16895) - 3767622..3768293 (+) 672 WP_329196368.1 GntR family transcriptional regulator -
  OG861_RS16890 (OG861_16900) - 3768541..3769191 (+) 651 WP_329196367.1 hypothetical protein -
  OG861_RS16895 (OG861_16905) - 3769225..3769950 (-) 726 WP_329196365.1 SLATT domain-containing protein -
  OG861_RS16900 (OG861_16910) - 3770224..3770568 (+) 345 WP_329196363.1 YbaB/EbfC family nucleoid-associated protein -
  OG861_RS16905 (OG861_16915) recR 3770618..3771217 (+) 600 WP_329196361.1 recombination mediator RecR Machinery gene
  OG861_RS16910 (OG861_16920) - 3771210..3771857 (+) 648 WP_329196359.1 DUF5063 domain-containing protein -
  OG861_RS16915 (OG861_16925) - 3772041..3773315 (+) 1275 WP_136217624.1 aspartate kinase -
  OG861_RS16920 (OG861_16930) - 3773312..3774388 (+) 1077 WP_329196356.1 aspartate-semialdehyde dehydrogenase -
  OG861_RS16925 (OG861_16935) - 3774693..3775403 (+) 711 WP_329202300.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21827.18 Da        Isoelectric Point: 5.1721

>NTDB_id=646527 OG861_RS16905 WP_329196361.1 3770618..3771217(+) (recR) [Streptomyces sp. NBC_00539]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQTEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDPTV
VCVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646527 OG861_RS16905 WP_329196361.1 3770618..3771217(+) (recR) [Streptomyces sp. NBC_00539]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGACCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTCGAAGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGGATCTGCCGCGACCCGCGCCGCGACCCGACGGTC
GTCTGTGTCGTGGAGGAGCCCAAGGACGTGGTCGCGATCGAGCGGACGCGCGAGTTCCGGGGGAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGTGAGCTGCTGGCGCGCCTCGCGGACGGCA
CGGTCACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCGATGGGCCTGAAAGTCACCCGCCTGGCCAGCGGACTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462