Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS09145 Genome accession   NZ_CP107811
Coordinates   2128391..2129092 (+) Length   233 a.a.
NCBI ID   WP_329198728.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2123391..2134092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS09115 (OG861_09125) - 2123651..2124208 (+) 558 WP_329198737.1 NADAR family protein -
  OG861_RS09120 (OG861_09130) - 2124259..2124696 (+) 438 WP_329198735.1 NUDIX hydrolase -
  OG861_RS09125 (OG861_09135) - 2124754..2125383 (-) 630 WP_329198733.1 DUF4190 domain-containing protein -
  OG861_RS09130 (OG861_09140) - 2125492..2126517 (+) 1026 WP_329198731.1 adenosine deaminase -
  OG861_RS09135 (OG861_09145) - 2126539..2127228 (+) 690 WP_329198730.1 glycerophosphodiester phosphodiesterase -
  OG861_RS09140 (OG861_09150) - 2127315..2128394 (+) 1080 WP_329202484.1 histidine kinase -
  OG861_RS09145 (OG861_09155) vraR 2128391..2129092 (+) 702 WP_329198728.1 response regulator transcription factor Regulator
  OG861_RS09150 (OG861_09160) - 2129239..2130447 (+) 1209 WP_330261686.1 serine hydrolase domain-containing protein -
  OG861_RS09155 (OG861_09165) - 2130459..2130932 (-) 474 WP_329198724.1 hypothetical protein -
  OG861_RS09160 (OG861_09170) - 2131031..2132209 (-) 1179 WP_329198722.1 spermidine/putrescine ABC transporter substrate-binding protein -
  OG861_RS09165 (OG861_09175) - 2132361..2133800 (-) 1440 WP_329198719.1 gamma-aminobutyraldehyde dehydrogenase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 24804.30 Da        Isoelectric Point: 5.3705

>NTDB_id=646508 OG861_RS09145 WP_329198728.1 2128391..2129092(+) (vraR) [Streptomyces sp. NBC_00539]
MTIRVVVADDQELVRSGFAMILDAQDDVEVVAEAGDGAAAVAAVRELRPDVALLDIRMPVTDGIEACRMISAQSTCRTVM
LTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAVTARPAAGAALSAGRLEALTA
RERETLLHLGRGRSNAEIAAALTVSEHTVKSHVGNVLAKLGLRDRIQAVICAYETGLISAGAWSPVRGTRSRE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=646508 OG861_RS09145 WP_329198728.1 2128391..2129092(+) (vraR) [Streptomyces sp. NBC_00539]
TTGACGATCCGTGTGGTGGTGGCCGACGACCAGGAGCTGGTGCGCAGCGGTTTCGCGATGATCCTGGACGCGCAGGACGA
CGTCGAGGTCGTCGCGGAGGCCGGGGACGGCGCCGCGGCGGTGGCGGCGGTCCGGGAGCTGCGGCCGGACGTGGCGCTGC
TGGACATCCGGATGCCGGTGACGGACGGGATCGAGGCGTGCCGGATGATCTCGGCGCAGAGCACCTGCCGGACGGTGATG
CTGACGACCTTCGACTCCGACGAGTACGTGTACGAGGCGCTGCACGCGGGGGCGAGCGGGTTCCTGTTGAAGGACGTGCG
GCGCGACGACCTGGTGCACGCGGTACGGGTGGTGGCGGCGGGCGACTCCCTGCTGGCGCCTTCGGTGGCGCGGCGCCTGA
TCGAGGAGTACACGGCGGTGACGGCGCGTCCGGCGGCCGGGGCGGCCCTTTCCGCGGGCCGGCTGGAGGCGCTGACGGCG
CGGGAGCGGGAGACGCTGCTGCACCTGGGGCGGGGGCGGTCGAACGCGGAGATCGCGGCGGCGCTGACGGTGAGCGAGCA
CACGGTGAAGTCGCACGTGGGGAACGTGCTGGCCAAGCTGGGTCTGCGGGACCGGATCCAGGCGGTGATCTGCGCGTACG
AGACGGGGCTGATCTCGGCGGGGGCGTGGTCCCCCGTGAGGGGTACTCGCTCTCGGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

94.421

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

39.286

96.137

0.378