Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS03755 Genome accession   NZ_CP107811
Coordinates   825721..826401 (+) Length   226 a.a.
NCBI ID   WP_329200540.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 820721..831401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS03735 (OG861_03740) - 821768..822916 (+) 1149 WP_329200547.1 hypothetical protein -
  OG861_RS03740 (OG861_03745) - 822843..823283 (-) 441 WP_329375118.1 hypothetical protein -
  OG861_RS03745 (OG861_03750) - 823367..824314 (-) 948 WP_329200543.1 AEC family transporter -
  OG861_RS03750 (OG861_03755) - 824396..825724 (+) 1329 WP_329200542.1 histidine kinase -
  OG861_RS03755 (OG861_03760) vraR 825721..826401 (+) 681 WP_329200540.1 response regulator transcription factor Regulator
  OG861_RS03760 (OG861_03765) - 826526..827572 (+) 1047 WP_329200538.1 alpha/beta hydrolase -
  OG861_RS03765 (OG861_03770) - 827569..828780 (+) 1212 WP_329200536.1 acyltransferase -
  OG861_RS03770 (OG861_03775) - 828798..829220 (-) 423 WP_329200534.1 DUF350 domain-containing protein -
  OG861_RS03775 (OG861_03780) - 829335..831149 (+) 1815 WP_329200532.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24304.25 Da        Isoelectric Point: 5.7171

>NTDB_id=646498 OG861_RS03755 WP_329200540.1 825721..826401(+) (vraR) [Streptomyces sp. NBC_00539]
MTIRVIIVDDQAMVRAGFAALLCAQADIDVVGEAPDGREGVRVARTVHPDVVLMDVRMPEMDGLAAAREILTPPAGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRIVASGEALLAPSVTRRLIADFVERRPAPRKDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVVAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVRPGDGA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=646498 OG861_RS03755 WP_329200540.1 825721..826401(+) (vraR) [Streptomyces sp. NBC_00539]
TTGACCATCCGTGTGATCATCGTCGACGACCAGGCGATGGTACGCGCCGGGTTCGCCGCCCTGCTCTGCGCCCAGGCCGA
CATCGATGTGGTGGGCGAGGCGCCGGACGGCCGGGAAGGGGTGCGGGTCGCGCGCACCGTGCACCCGGACGTGGTGCTGA
TGGACGTACGGATGCCGGAGATGGACGGCCTCGCGGCGGCGCGGGAGATCCTCACCCCGCCGGCGGGCGTGGTCCACCGG
CCGAAGGTGCTGATGCTGACCACGTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCGTCCGGCTTCCT
CCTCAAGGACGCTCCGCCGGCCGATCTGATCGCCGCGGTGCGGATCGTCGCCTCGGGCGAGGCGCTGCTGGCGCCGTCGG
TGACGCGCCGGCTGATCGCGGACTTCGTGGAGCGGCGGCCGGCGCCCCGCAAGGACCCGGCGCTACGGCTGAACGGCCTG
ACTCCCCGTGAGACCGAGGTACTGGAGCTCATCGCGCGCGGTCTGTCGAACCAGGAGATCGCCGGGCACCTGGTGGTGGC
GGAGCAGACGGTCAAGACGCACATCGGGCGGGTGCTGGCCAAGCTGGACCTGCGGGACCGGGCCCAGGCGGTGATCTTCG
CCTACGAGGCGGGTCTGGTCCGGCCCGGAGACGGCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.081

97.788

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

37.555

100

0.381